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Platform GPL4767 Query DataSets for GPL4767
Status Public on Feb 01, 2007
Title FHCRC Human Prostate PEDB cDNA Array v9
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Homo sapiens
Manufacturer FHCRC Array Facility
Manufacture protocol DNA spotted onto polylysine-coated glass microscope slides
Support glass
Coating polysine
 
Description FHCRC Human Prostate PEDB cDNA Array v9
 
Web link http://www.pedb.org
Contributor(s) Nelson PS, Coleman I, Dumpit R, Abbott DE
Submission date Jan 19, 2007
Last update date Jan 17, 2013
Contact name Denise Mauldin
E-mail(s) dmauldin@fhcrc.org
Phone 2066673480
Fax 2066672917
URL http://www.pedb.org
Organization name Fred Hutchinson Cancer Research Center
Department Human Biology
Lab Peter Nelson
Street address 1100 Fairview Ave N D4-100
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Samples (22) GSM992445, GSM992446, GSM992447, GSM992448, GSM992449, GSM992450 
Series (2)
GSE40373 Prostate Cancer–Associated Gene Expression Alterations Determined from Needle Biopsies
GSE40434 Molecular alterations in prostate carcinomas that associate with in vivo exposure to chemotherapy

Data table header descriptions
ID
MetaCol Column referring to overall organization
MetaRow Row referring to overall organization
Column Column within metastructure
Row Row within metastructure
Biosequence Type type of clone
Strand Type strandedness
GB_ACC Accession number
SPOT_ID problem sequence identification; controls; empty spots
UNIGENE Unigene Cluster from Unigene 192
Reporter Usage Reporter role [control or experimental]
Control Type Type of Control
PEDB Spot ID Spot ID, one per gene on array
Designation Reporter type
Related Gene Symbol Hugo/Gene Symbol
Description Gene description
GENE Entrez GENE ID
Chromosome Chromosome Location
Clone Plate ID Clone location on Print Plate

Data table
ID MetaCol MetaRow Column Row Biosequence Type Strand Type GB_ACC SPOT_ID UNIGENE Reporter Usage Control Type PEDB Spot ID Designation Related Gene Symbol Description GENE Chromosome Clone Plate ID
221741 1 1 1 1 cdna clone double BC005306 546239 Experimental P:1 Gene AZGP1 Alpha-2-glycoprotein 1 zinc 563 7q22.1 01_A01
221742 1 1 2 1 cdna clone double CB999860 406510 Experimental P:5 Gene ATP5B ATP synthase H+ transporting mitochondrial F1 complex beta polypeptide 506 12q13.13 01_A03
221743 1 1 3 1 cdna clone double CN394166 8372 Experimental P:9 Gene UQCR Ubiquinol-cytochrome c reductase 64kDa subunit 10975 19p13.3 01_A05
221744 1 1 4 1 cdna clone double BI492672 479208 Experimental P:13 Gene FBXL5 F-box and leucine-rich repeat protein 5 26234 4p15.33 01_A07
221745 1 1 5 1 cdna clone double BI492672 479208 Experimental P:17 Gene FBXL5 F-box and leucine-rich repeat protein 5 26234 4p15.33 01_A09
221746 1 1 6 1 cdna clone double CR982123 520048 Experimental P:21 Gene HLA-DRA Major histocompatibility complex class II DR alpha 3122 6p21.3 01_A11
221747 1 1 7 1 cdna clone double BU165091 433427 Experimental P:97 Gene RPS17 Ribosomal protein S17 6218 15q 01_C01
221748 1 1 8 1 cdna clone double AK130815 171189 Experimental P:101 Gene AHR Aryl hydrocarbon receptor 196 7p15 01_C03
221749 1 1 9 1 cdna clone double DR421657 356794 Experimental P:105 Gene RPS24 Ribosomal protein S24 6229 10q22-q23 01_C05
221750 1 1 10 1 cdna clone double BQ227048 446427 Experimental P:109 Gene OAZ1 Ornithine decarboxylase antizyme 1 4946 19p13.3 01_C07
221751 1 1 11 1 cdna clone double BU627391 497039 Experimental P:113 Gene LAMC1 Laminin gamma 1 (formerly LAMB2) 3915 1q31 01_C09
221752 1 1 12 1 cdna clone double AC009167 - Experimental P:117 Gene - Homo sapiens chromosome 16 clone RP11-82O18 complete sequence - - 01_C11
221753 1 1 13 1 cdna clone double L41143 517962 Experimental P:193 Gene TCTA T-cell leukemia translocation altered gene 6988 3p21 01_E01
221754 1 1 14 1 cdna clone double -- Failed Sequencing - Experimental P:197 Gene - Failed Sequencing - - 01_E03
221755 1 1 15 1 cdna clone double CA307243 592288 Experimental P:201 Gene PBEF1 Pre-B-cell colony enhancing factor 1 10135 7q22.2 01_E05
221756 1 1 16 1 cdna clone double AB011165 282678 Experimental P:205 Gene THRAP1 Thyroid hormone receptor associated protein 1 9969 17q22-q23 01_E07
221757 1 1 17 1 cdna clone double -- Failed Sequencing - Experimental P:209 Gene - Failed Sequencing - - 01_E09
221758 1 1 18 1 cdna clone double -- Failed Sequencing - Experimental P:213 Gene - Failed Sequencing - - 01_E11
221759 1 1 19 1 cdna clone double AK027893 408427 Experimental P:289 Gene COMMD7 COMM domain containing 7 149951 20q11.21 01_G01
221760 1 1 20 1 cdna clone double BC001960 436405 Experimental P:293 Gene IDH3B Isocitrate dehydrogenase 3 (NAD+) beta 3420 20p13 01_G03

Total number of rows: 15488

Table truncated, full table size 2075 Kbytes.




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