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Status |
Public on Feb 01, 2007 |
Title |
FHCRC Human Prostate PEDB cDNA Array v9 |
Technology type |
spotted DNA/cDNA |
Distribution |
non-commercial |
Organism |
Homo sapiens |
Manufacturer |
FHCRC Array Facility |
Manufacture protocol |
DNA spotted onto polylysine-coated glass microscope slides
|
Support |
glass |
Coating |
polysine |
|
|
Description |
FHCRC Human Prostate PEDB cDNA Array v9
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|
Web link |
http://www.pedb.org
|
Contributor(s) |
Nelson PS, Coleman I, Dumpit R, Abbott DE |
Submission date |
Jan 19, 2007 |
Last update date |
Jan 17, 2013 |
Contact name |
Denise Mauldin |
E-mail(s) |
dmauldin@fhcrc.org
|
Phone |
2066673480
|
Fax |
2066672917
|
URL |
http://www.pedb.org
|
Organization name |
Fred Hutchinson Cancer Research Center
|
Department |
Human Biology
|
Lab |
Peter Nelson
|
Street address |
1100 Fairview Ave N D4-100
|
City |
Seattle |
State/province |
WA |
ZIP/Postal code |
98109 |
Country |
USA |
|
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Samples (22)
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GSM992445, GSM992446, GSM992447, GSM992448, GSM992449, GSM992450
GSM992451, GSM992452, GSM992453, GSM992454, GSM992455, GSM993972, GSM993973, GSM993974, GSM993975, GSM993976, GSM993977, GSM993978, GSM993979, GSM993980, GSM993981, GSM993982
|
Series (2) |
GSE40373 |
Prostate Cancer–Associated Gene Expression Alterations Determined from Needle Biopsies |
GSE40434 |
Molecular alterations in prostate carcinomas that associate with in vivo exposure to chemotherapy |
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Data table header descriptions |
ID |
|
MetaCol |
Column referring to overall organization |
MetaRow |
Row referring to overall organization |
Column |
Column within metastructure |
Row |
Row within metastructure |
Biosequence Type |
type of clone |
Strand Type |
strandedness |
GB_ACC |
Accession number |
SPOT_ID |
problem sequence identification; controls; empty spots |
UNIGENE |
Unigene Cluster from Unigene 192 |
Reporter Usage |
Reporter role [control or experimental] |
Control Type |
Type of Control |
PEDB Spot ID |
Spot ID, one per gene on array |
Designation |
Reporter type |
Related Gene Symbol |
Hugo/Gene Symbol |
Description |
Gene description |
GENE |
Entrez GENE ID |
Chromosome |
Chromosome Location |
Clone Plate ID |
Clone location on Print Plate |
Data table |
ID |
MetaCol |
MetaRow |
Column |
Row |
Biosequence Type |
Strand Type |
GB_ACC |
SPOT_ID |
UNIGENE |
Reporter Usage |
Control Type |
PEDB Spot ID |
Designation |
Related Gene Symbol |
Description |
GENE |
Chromosome |
Clone Plate ID |
221741 |
1 |
1 |
1 |
1 |
cdna clone |
double |
BC005306 |
|
546239 |
Experimental |
|
P:1 |
Gene |
AZGP1 |
Alpha-2-glycoprotein 1 zinc |
563 |
7q22.1 |
01_A01 |
221742 |
1 |
1 |
2 |
1 |
cdna clone |
double |
CB999860 |
|
406510 |
Experimental |
|
P:5 |
Gene |
ATP5B |
ATP synthase H+ transporting mitochondrial F1 complex beta polypeptide |
506 |
12q13.13 |
01_A03 |
221743 |
1 |
1 |
3 |
1 |
cdna clone |
double |
CN394166 |
|
8372 |
Experimental |
|
P:9 |
Gene |
UQCR |
Ubiquinol-cytochrome c reductase 64kDa subunit |
10975 |
19p13.3 |
01_A05 |
221744 |
1 |
1 |
4 |
1 |
cdna clone |
double |
BI492672 |
|
479208 |
Experimental |
|
P:13 |
Gene |
FBXL5 |
F-box and leucine-rich repeat protein 5 |
26234 |
4p15.33 |
01_A07 |
221745 |
1 |
1 |
5 |
1 |
cdna clone |
double |
BI492672 |
|
479208 |
Experimental |
|
P:17 |
Gene |
FBXL5 |
F-box and leucine-rich repeat protein 5 |
26234 |
4p15.33 |
01_A09 |
221746 |
1 |
1 |
6 |
1 |
cdna clone |
double |
CR982123 |
|
520048 |
Experimental |
|
P:21 |
Gene |
HLA-DRA |
Major histocompatibility complex class II DR alpha |
3122 |
6p21.3 |
01_A11 |
221747 |
1 |
1 |
7 |
1 |
cdna clone |
double |
BU165091 |
|
433427 |
Experimental |
|
P:97 |
Gene |
RPS17 |
Ribosomal protein S17 |
6218 |
15q |
01_C01 |
221748 |
1 |
1 |
8 |
1 |
cdna clone |
double |
AK130815 |
|
171189 |
Experimental |
|
P:101 |
Gene |
AHR |
Aryl hydrocarbon receptor |
196 |
7p15 |
01_C03 |
221749 |
1 |
1 |
9 |
1 |
cdna clone |
double |
DR421657 |
|
356794 |
Experimental |
|
P:105 |
Gene |
RPS24 |
Ribosomal protein S24 |
6229 |
10q22-q23 |
01_C05 |
221750 |
1 |
1 |
10 |
1 |
cdna clone |
double |
BQ227048 |
|
446427 |
Experimental |
|
P:109 |
Gene |
OAZ1 |
Ornithine decarboxylase antizyme 1 |
4946 |
19p13.3 |
01_C07 |
221751 |
1 |
1 |
11 |
1 |
cdna clone |
double |
BU627391 |
|
497039 |
Experimental |
|
P:113 |
Gene |
LAMC1 |
Laminin gamma 1 (formerly LAMB2) |
3915 |
1q31 |
01_C09 |
221752 |
1 |
1 |
12 |
1 |
cdna clone |
double |
AC009167 |
|
- |
Experimental |
|
P:117 |
Gene |
- |
Homo sapiens chromosome 16 clone RP11-82O18 complete sequence |
- |
- |
01_C11 |
221753 |
1 |
1 |
13 |
1 |
cdna clone |
double |
L41143 |
|
517962 |
Experimental |
|
P:193 |
Gene |
TCTA |
T-cell leukemia translocation altered gene |
6988 |
3p21 |
01_E01 |
221754 |
1 |
1 |
14 |
1 |
cdna clone |
double |
|
-- Failed Sequencing |
- |
Experimental |
|
P:197 |
Gene |
- |
Failed Sequencing |
- |
- |
01_E03 |
221755 |
1 |
1 |
15 |
1 |
cdna clone |
double |
CA307243 |
|
592288 |
Experimental |
|
P:201 |
Gene |
PBEF1 |
Pre-B-cell colony enhancing factor 1 |
10135 |
7q22.2 |
01_E05 |
221756 |
1 |
1 |
16 |
1 |
cdna clone |
double |
AB011165 |
|
282678 |
Experimental |
|
P:205 |
Gene |
THRAP1 |
Thyroid hormone receptor associated protein 1 |
9969 |
17q22-q23 |
01_E07 |
221757 |
1 |
1 |
17 |
1 |
cdna clone |
double |
|
-- Failed Sequencing |
- |
Experimental |
|
P:209 |
Gene |
- |
Failed Sequencing |
- |
- |
01_E09 |
221758 |
1 |
1 |
18 |
1 |
cdna clone |
double |
|
-- Failed Sequencing |
- |
Experimental |
|
P:213 |
Gene |
- |
Failed Sequencing |
- |
- |
01_E11 |
221759 |
1 |
1 |
19 |
1 |
cdna clone |
double |
AK027893 |
|
408427 |
Experimental |
|
P:289 |
Gene |
COMMD7 |
COMM domain containing 7 |
149951 |
20q11.21 |
01_G01 |
221760 |
1 |
1 |
20 |
1 |
cdna clone |
double |
BC001960 |
|
436405 |
Experimental |
|
P:293 |
Gene |
IDH3B |
Isocitrate dehydrogenase 3 (NAD+) beta |
3420 |
20p13 |
01_G03 |
Total number of rows: 15488
Table truncated, full table size 2075 Kbytes.
Supplementary data files not provided |
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