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Status
Public on Jan 11, 2007
Title
SWEGENE_BAC_32K_Full
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Homo sapiens Manufacturer
Swegene DNA Microarray Resource Centre
Manufacture protocol
Arrays were produced using amplified genomic DNA from BAC clones. Amplification was performed using degenerate oligonucleotide primed PCR and products were purified by size-exclusion filtration and verified by agarose gel electrophoresis. After purification, products were dried down, recovered in 50% DMSO to a concentration of 500-1000ng/µl, and printed on amino-silane-coated glass slides (UltraGAPS from Corning) using a MicroGrid2 robot (BioRobotics) equipped with MicroSpot2500 pins (BioRobotics).
Support
glass
Coating
aminosilane
Description
The 32k BAC Re-Array set Ver. 1.0 (32,433 BAC clones) was obtained from the BACPAC Resource Center at Children's Hospital Oakland Research Institute, Oakland (CA, US). The average resolution of the whole genome tiling clone set is 46kb. Clones were mapped to human genome build 17 (UCSC Human Genome Browser)
Web link
http://swegene.onk.lu.se Contributor(s)
Borg A Submission date
Jan 05, 2007
Last update date
May 21, 2007
Contact name
Johan Staaf
Organization name
SCIBLU - Swegene Centre for Integrative Biology at Lund University
Street address
Medicon Village
City
Lund
ZIP/Postal code
SE-223 81
Country
Sweden
Samples (1274)
GSM155207 , GSM155208 , GSM155209 , GSM155210 , GSM155211 , GSM155212
GSM155213 ,
GSM155214 ,
GSM155215 ,
GSM155216 ,
GSM155217 ,
GSM156004 ,
GSM156005 ,
GSM156006 ,
GSM156007 ,
GSM156008 ,
GSM156009 ,
GSM156010 ,
GSM156011 ,
GSM156012 ,
GSM156013 ,
GSM156014 ,
GSM156015 ,
GSM156016 ,
GSM156017 ,
GSM156018 ,
GSM156019 ,
GSM156020 ,
GSM156021 ,
GSM156022 ,
GSM156023 ,
GSM156024 ,
GSM156025 ,
GSM156026 ,
GSM156027 ,
GSM156028 ,
GSM156029 ,
GSM156030 ,
GSM156031 ,
GSM156032 ,
GSM156033 ,
GSM156034 ,
GSM156035 ,
GSM156036 ,
GSM156037 ,
GSM156038 ,
GSM156039 ,
GSM156040 ,
GSM156041 ,
GSM156042 ,
GSM156043 ,
GSM156044 ,
GSM156045 ,
GSM156046 ,
GSM156047 ,
GSM156048 ,
GSM156049 ,
GSM156050 ,
GSM312343 ,
GSM312344 ,
GSM312345 ,
GSM312346 ,
GSM312347 ,
GSM312348 ,
GSM312349 ,
GSM312350 ,
GSM312351 ,
GSM312352 ,
GSM312353 ,
GSM312354 ,
GSM312355 ,
GSM312356 ,
GSM312357 ,
GSM312358 ,
GSM312359 ,
GSM312360 ,
GSM312361 ,
GSM312362 ,
GSM312363 ,
GSM312364 ,
GSM312365 ,
GSM312366 ,
GSM312367 ,
GSM312368 ,
GSM312369 ,
GSM312370 ,
GSM312371 ,
GSM312372 ,
GSM312373 ,
GSM312374 ,
GSM312375 ,
GSM312376 ,
GSM312377 ,
GSM312378 ,
GSM312379 ,
GSM312380 ,
GSM312381 ,
GSM312382 ,
GSM312383 ,
GSM312384 ,
GSM312385 ,
GSM312386 ,
GSM312387 ,
GSM312388 ,
GSM312389 ,
GSM312390 ,
GSM312391 ,
GSM312392 ,
GSM312393 ,
GSM312394 ,
GSM312395 ,
GSM312396 ,
GSM312397 ,
GSM312398 ,
GSM312399 ,
GSM312400 ,
GSM312401 ,
GSM312402 ,
GSM312403 ,
GSM312404 ,
GSM315709 ,
GSM315710 ,
GSM315711 ,
GSM315712 ,
GSM320088 ,
GSM320089 ,
GSM320091 ,
GSM320092 ,
GSM320093 ,
GSM320094 ,
GSM320095 ,
GSM320096 ,
GSM320097 ,
GSM320098 ,
GSM320099 ,
GSM320100 ,
GSM320101 ,
GSM320102 ,
GSM320103 ,
GSM320104 ,
GSM320105 ,
GSM320106 ,
GSM320107 ,
GSM320108 ,
GSM320109 ,
GSM320110 ,
GSM320111 ,
GSM320112 ,
GSM320113 ,
GSM320114 ,
GSM320115 ,
GSM320116 ,
GSM320117 ,
GSM320118 ,
GSM320119 ,
GSM320120 ,
GSM320121 ,
GSM320122 ,
GSM320123 ,
GSM320124 ,
GSM320125 ,
GSM320126 ,
GSM320127 ,
GSM320128 ,
GSM320130 ,
GSM320131 ,
GSM320132 ,
GSM320133 ,
GSM320134 ,
GSM320135 ,
GSM320136 ,
GSM320137 ,
GSM320138 ,
GSM320139 ,
GSM320140 ,
GSM320141 ,
GSM320142 ,
GSM320143 ,
GSM322209 ,
GSM322210 ,
GSM322211 ,
GSM322212 ,
GSM322213 ,
GSM322214 ,
GSM322215 ,
GSM322216 ,
GSM322217 ,
GSM322218 ,
GSM346703 ,
GSM346704 ,
GSM346705 ,
GSM346706 ,
GSM346707 ,
GSM346708 ,
GSM346709 ,
GSM346710 ,
GSM346711 ,
GSM346712 ,
GSM346713 ,
GSM346714 ,
GSM346715 ,
GSM346716 ,
GSM346717 ,
GSM346718 ,
GSM346719 ,
GSM346720 ,
GSM346721 ,
GSM346722 ,
GSM346723 ,
GSM346724 ,
GSM346725 ,
GSM346726 ,
GSM346727 ,
GSM346728 ,
GSM346729 ,
GSM346730 ,
GSM346731 ,
GSM346732 ,
GSM346733 ,
GSM346734 ,
GSM346735 ,
GSM346736 ,
GSM346737 ,
GSM346738 ,
GSM346739 ,
GSM346740 ,
GSM346741 ,
GSM346742 ,
GSM346743 ,
GSM346744 ,
GSM346745 ,
GSM346746 ,
GSM346747 ,
GSM346748 ,
GSM346749 ,
GSM346750 ,
GSM346751 ,
GSM497775 ,
GSM497776 ,
GSM497777 ,
GSM497778 ,
GSM497779 ,
GSM497780 ,
GSM497781 ,
GSM497782 ,
GSM497783 ,
GSM497784 ,
GSM497785 ,
GSM497786 ,
GSM497787 ,
GSM497788 ,
GSM497789 ,
GSM497790 ,
GSM497791 ,
GSM497792 ,
GSM497793 ,
GSM497794 ,
GSM497795 ,
GSM497796 ,
GSM497797 ,
GSM497798 ,
GSM497799 ,
GSM497800 ,
GSM497801 ,
GSM497802 ,
GSM497803 ,
GSM497804 ,
GSM497805 ,
GSM497806 ,
GSM497807 ,
GSM497808 ,
GSM497809 ,
GSM497810 ,
GSM497811 ,
GSM497812 ,
GSM497813 ,
GSM497814 ,
GSM497815 ,
GSM497816 ,
GSM497817 ,
GSM497818 ,
GSM497819 ,
GSM497820 ,
GSM497821 ,
GSM497822 ,
GSM497823 ,
GSM497824 ,
GSM497825 ,
GSM497826 ,
GSM497827 ,
GSM497828 ,
GSM497829 ,
GSM497830 ,
GSM497831 ,
GSM497832 ,
GSM497833 ,
GSM497834 ,
GSM497835 ,
GSM497836 ,
GSM497837 ,
GSM497838 ,
GSM497839 ,
GSM497840 ,
GSM497841 ,
GSM497842 ,
GSM497843 ,
GSM497844 ,
GSM497845 ,
GSM497846 ,
GSM497847 ,
GSM497848 ,
GSM497849 ,
GSM497850 ,
GSM497851 ,
GSM497852 ,
GSM497853 ,
GSM497854 ,
GSM497855 ,
GSM497856 ,
GSM497857 ,
GSM497858 ,
GSM497859 ,
GSM497860 ,
GSM497861 ,
GSM497862 ,
GSM497863 ,
GSM497864 ,
GSM497865 ,
GSM497866 ,
GSM497867 ,
GSM497868 ,
GSM497869 ,
GSM497870 ,
GSM497871 ,
GSM497872 ,
GSM497873 ,
GSM497874 ,
GSM497875 ,
GSM497876 ,
GSM497877 ,
GSM531376 ,
GSM531377 ,
GSM531378 ,
GSM531379 ,
GSM531380 ,
GSM531381 ,
GSM531382 ,
GSM531383 ,
GSM531384 ,
GSM531385 ,
GSM531386 ,
GSM531387 ,
GSM531388 ,
GSM531389 ,
GSM531390 ,
GSM531391 ,
GSM531392 ,
GSM531393 ,
GSM531394 ,
GSM531395 ,
GSM531396 ,
GSM531397 ,
GSM531398 ,
GSM531399 ,
GSM531400 ,
GSM531401 ,
GSM531402 ,
GSM531403 ,
GSM531404 ,
GSM531405 ,
GSM531406 ,
GSM531407 ,
GSM531408 ,
GSM531409 ,
GSM531410 ,
GSM531411 ,
GSM531412 ,
GSM531413 ,
GSM531414 ,
GSM531415 ,
GSM531416 ,
GSM531417 ,
GSM531418 ,
GSM531419 ,
GSM531420 ,
GSM531421 ,
GSM531422 ,
GSM531423 ,
GSM531424 ,
GSM531425 ,
GSM531426 ,
GSM531427 ,
GSM531428 ,
GSM531429 ,
GSM531430 ,
GSM531431 ,
GSM531432 ,
GSM531433 ,
GSM531434 ,
GSM531435 ,
GSM531436 ,
GSM531437 ,
GSM531438 ,
GSM531439 ,
GSM531440 ,
GSM531441 ,
GSM531442 ,
GSM531443 ,
GSM531444 ,
GSM531445 ,
GSM531446 ,
GSM531447 ,
GSM531448 ,
GSM531449 ,
GSM531450 ,
GSM531451 ,
GSM531452 ,
GSM531453 ,
GSM531454 ,
GSM531455 ,
GSM531456 ,
GSM531457 ,
GSM531458 ,
GSM531459 ,
GSM531460 ,
GSM531461 ,
GSM531462 ,
GSM551252 ,
GSM551253 ,
GSM551254 ,
GSM551255 ,
GSM551256 ,
GSM551257 ,
GSM551258 ,
GSM551259 ,
GSM551260 ,
GSM551261 ,
GSM551262 ,
GSM551263 ,
GSM551264 ,
GSM551265 ,
GSM551266 ,
GSM551267 ,
GSM551268 ,
GSM551269 ,
GSM551270 ,
GSM551271 ,
GSM551272 ,
GSM551273 ,
GSM551274 ,
GSM551275 ,
GSM551276 ,
GSM551277 ,
GSM551278 ,
GSM551279 ,
GSM551280 ,
GSM551281 ,
GSM551282 ,
GSM551283 ,
GSM551284 ,
GSM551285 ,
GSM551286 ,
GSM551287 ,
GSM551288 ,
GSM551289 ,
GSM551290 ,
GSM551291 ,
GSM551292 ,
GSM551293 ,
GSM551294 ,
GSM551295 ,
GSM551296 ,
GSM551297 ,
GSM551298 ,
GSM551299 ,
GSM551300 ,
GSM551301 ,
GSM551302 ,
GSM551303 ,
GSM551304 ,
GSM551305 ,
GSM551306 ,
GSM551307 ,
GSM551308 ,
GSM551309 ,
GSM551310 ,
GSM551311 ,
GSM551312 ,
GSM551313 ,
GSM551314 ,
GSM551315 ,
GSM551316 ,
GSM551317 ,
GSM551318 ,
GSM551319 ,
GSM551320 ,
GSM551321 ,
GSM551322 ,
GSM551323 ,
GSM551324 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (22)
GSE6746 High-resolution genomic profiles of breast cancer cell lines
GSE6779 Genomic Profiling of Malignant Melanoma using tiling resolution array CGH
GSE12439 Genomic profiling of chondrosarcoma: chromosomal patterns in central and peripheral tumors (BAC/CGH)
GSE12532 Genomic profiling of chondrosarcoma: chromosomal patterns in central and peripheral tumors
GSE12593 DNA copy number analysis of myxoinflammatory fibroblastic sarcoma, and morphologically similar lesions
GSE12595 Two genetic pathways in myxoinflammatory fibroblastic sarcoma and morphologically similar lesions
GSE12759 Chromosome 11q and its association with CCND1 gene amplification and tamoxifen resistance in premenopausal breast cancer
GSE13557 Screening for copy-number alterations and LOH in CLL - a comparative study of four microarray platforms
GSE13775 Shared prognostic markers in undifferentiated pleomorphic sarcoma and leiomyosarcoma of the extremities
GSE19915 Subtype classification, grading, and outcome prediction of urothelial carcinomas by combined mRNA profiling and aCGH
GSE21259 High-resolution aCGH analyses of copy number alterations in HER2-amplified breast cancer
GSE22133 Genomic Subtypes of Breast Cancer Identified by Array Comparative Genomic Hybridization
GSE22524 Genomic profiling of gastroesophageal adenocarcinoma
GSE24698 Breast tumors from CHEK2 1100delC mutation carriers: genomic landscape and clinical implications (CGH)
GSE24707 Breast tumors from CHEK2 1100delC mutation carriers: genomic landscape and clinical implications
GSE28850 Genomic profiling of hereditary epithelial ovarian cancer using tiling resolution array CGH
GSE29065 Landscape of somatic allelic imbalances and copy number alterations in human lung carcinoma
GSE29066 Molecular profiling of primary lung carcinomas
GSE32535 Integrated genomic and gene expression profiling identifies two major gene/genomic circuits operating in urothelial carcinoma (genomic)
GSE32549 Integrated genomic and gene expression profiling identifies two major gene/genomic circuits operating in urothelial carcinoma
GSE32578 Characterization of amplification patterns and target genes at chromosome 11q13 in CCND1-amplified sporadic and familial breast tumors
GSE38405 Genomic profiling of colorectal cancer from patients with Lynch syndrome and Familial colorectal cancer type X with comparison to sporadic microsatelite stable and instable colorectal cancer
Data table header descriptions ID CLONE_ID Identifier ID for BAC clones
SPOT_ID Identifier for spots that do not contain BAC derived probes
CHR Chromosome (1-24) assigned to BAC clone
START Start base within chromosome assigned to BAC clone
END End base within chromosome assigned to BAC clone
ReporterID Reporter ID for spot, i.e., either CLONE_ID or SPOT_ID
34992 1648 Kbytes .Supplementary data files not provided
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