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Status
Public on Dec 06, 2006
Title
Entamoeba histolytica E_his-1a520285F array (coding regions)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Entamoeba histolytica Manufacturer
Affymetrix
Manufacture protocol
A custom generated Affymetrix platform full genome microarray (E_his-1a520285F). This array has 7,712 unique probe sets representing 9,435 open reading frames (ORFs). Due to the highly repetitive nature of the E. histolytica genome, some of the probe sets are predicted to cross-hybridize with other sequences. Probe sets that represent a single gene are labeled as (_at). Probe sets in which at least one probe may cross-hybridize with another gene(s) are labeled as (_x_at). In situations where all the probe sets for a given gene cross-hybridize with another gene(s), the probe sets are labeled as (_s_at) and additional genes that cross-hybridize with these probe sets are listed in Supplementary Table 2. This array also contains probes for intergenic non-coding regions, however, these are not included in this submission.
Support
glass
Coating
unknown
Contributor(s)
Gilchrist CA , Petri WA , Singh U , Ehrenkaufer GM Citation(s)
16569449 Submission date
Dec 04, 2006
Last update date
Dec 06, 2006
Contact name
Gretchen Marie Ehrenkaufer
E-mail(s)
gehrenk@stanford.edu Organization name
Stanford Uninversity
Department
Microbiology and Immunology
Lab
Singh
Street address
Grant S-143, 300 Pasteur Dr.
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Samples (67)
GSM153888 , GSM153889 , GSM153890 , GSM153891 , GSM154008 , GSM154009
GSM154010 ,
GSM154011 ,
GSM154012 ,
GSM154013 ,
GSM154014 ,
GSM154015 ,
GSM154016 ,
GSM154017 ,
GSM154018 ,
GSM154019 ,
GSM154020 ,
GSM154021 ,
GSM154022 ,
GSM154023 ,
GSM154024 ,
GSM154043 ,
GSM154044 ,
GSM198739 ,
GSM198740 ,
GSM198741 ,
GSM198742 ,
GSM198743 ,
GSM198744 ,
GSM198745 ,
GSM298654 ,
GSM298655 ,
GSM298656 ,
GSM298657 ,
GSM298658 ,
GSM298659 ,
GSM298660 ,
GSM298661 ,
GSM298662 ,
GSM306470 ,
GSM306471 ,
GSM306632 ,
GSM306633 ,
GSM306634 ,
GSM306635 ,
GSM306636 ,
GSM306637 ,
GSM306640 ,
GSM306641 ,
GSM306642 ,
GSM307076 ,
GSM307078 ,
GSM307079 ,
GSM307080 ,
GSM307081 ,
GSM307082 ,
GSM326029 ,
GSM326030 ,
GSM326031 ,
GSM326032 ,
GSM326033 ,
GSM326034 ,
GSM326035 ,
GSM537538 ,
GSM537539 ,
GSM537540 ,
GSM537541 Series (10)
GSE6635 Expression data of E. histolytica trophozoites treated with 5AzaC
GSE6648 Gene expression in Entamoeba histolytica cysts and trophozoites
GSE6650 Comparison of normal and heat shock trophozoites
GSE8047 Effect of growth in TSA or SCFA on gene expression in E. histolytica
GSE8484 Impact of intestinal colonization and invasion on the Entamoeba histolytica transcriptome.
GSE11811 Effect of treatment with H2O2 or DPTA-NONOate on E. histolytica
GSE12188 Targets of the E. histolytica transcription factor URE3-BP
GSE12204 Characterization of an Entamoeba histolytica High-Mobility-Group Box Protein Induced during Intestinal Infection
GSE13023 Effects of overexpression of EhMyb-dr on transcription in Entamoeba histolytica
GSE21522 Effect of Rom1 silencing on gene expression in Entamoeba histolytica
Data table header descriptions ID GB_ACC GenBank XM number
Locus Locus ID from TIGR (as of 12/06)
CDS CDS ID from TIGR (as of 12/06)
Annotation Annotation from TIGR
SPOT_ID
Data table ID GB_ACC Locus CDS Annotation SPOT_ID 1.m00596_at
XM_652504 1.t00001
1.m00596
actin-like protein, putative
1.m00597_at
XM_652383 1.t00002
1.m00597
SEC-24 protein, putative
1.m00599_at
XM_652449 1.t00003
1.m00599
hypothetical protein
1.m00600_x_at
XM_652365 1.t00004
1.m00600
hypothetical protein
1.m00602_at
XM_652374 1.t00006
1.m00602
hypothetical protein
1.m00602_x_at
XM_652374 1.t00006
1.m00602
hypothetical protein
1.m00603_at
XM_652375 1.t00007
1.m00603
hypothetical protein
1.m00603_x_at
XM_652375 1.t00007
1.m00603
hypothetical protein
1.m00606_s_at
XM_652473 1.t00009
1.m00606
hypothetical protein
1.m00607_at
XM_652515 1.t00010
1.m00607
hypothetical protein
1.m00607_x_at
XM_652515 1.t00010
1.m00607
hypothetical protein
1.m00608_at
XM_652497 1.t00011
1.m00608
protein kinase, putative
1.m00608_x_at
XM_652497 1.t00011
1.m00608
protein kinase, putative
1.m00609_at
XM_652498 1.t00012
1.m00609
tRNA splicing endonuclease, putative
1.m00609_x_at
XM_652498 1.t00012
1.m00609
tRNA splicing endonuclease, putative
1.m00610_at
XM_652499 1.t00013
1.m00610
hypothetical protein
1.m00611_at
XM_652500 1.t00014
1.m00611
hypothetical protein
1.m00611_x_at
XM_652500 1.t00014
1.m00611
hypothetical protein
1.m00613_at
XM_652502 1.t00016
1.m00613
hypothetical protein
1.m00613_x_at
XM_652502 1.t00016
1.m00613
hypothetical protein
11478 829 Kbytes .Supplementary file Size Download File type/resource GPL4622.cdf.gz
7.0 Mb
(ftp) (http) CDF
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