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Platform GPL4250 Query DataSets for GPL4250
Status Public on Sep 08, 2006
Title JCVI PFGRC Francisella tularensis 12K v1 array designed primarily based on strain Schu4
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Francisella tularensis
Manufacturer JCVI PFGRC
Manufacture protocol QFT, with arrayer LUCIDEA, mode Normal, replicates 4, repeats 1, slide_dips 38, machine cycles 1747430, pen id 0, pen cycles -1, operator Jon, humidity control On, humidity set point65
Support glass
Coating Epoxy
 
Description This set includes 2331 oligonucleotides, has 12288 spots distributed in 96 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Aug 31, 2006
Last update date Nov 20, 2007
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Samples (4) GSM1069770, GSM1069771, GSM1069772, GSM1069773
Series (1)
GSE43731 Gene Expression of F. tularensis LVS in hepatocytic cell line FL83B vs LVS cultured in MH broth

Data table header descriptions
ID
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain LVS Target map of strain LVS
Strain Schu4 Target map of strain Schu4
Strain F6168 Target map of strain F6168

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain LVS Strain Schu4 Strain F6168
QFT00001_A_1 TTTAGCTACCTTATGGATGGCGATAGCTGCTGATATGGGAGCTACGCTAATTGTTATAATAAACTCGCTG 41.43 31 101 LVS NT04FT0399 cadmium-translocating P-type ATPase NT04FT0399::70::100.0::2.3E-11::+ FTT0866c::70::100.0::2.5E-11::-
QFT00001_A_10 GCTGAGTTTGTAAACTCTAATGCTAAAAAAGTCTCTGAAGGTGACAAACAAACTTTTATTGAAAATTTCA 30.0 33 90 LVS NT04FT0053 prephenate dehydrogenase NT04FT0053::70::100.0::1.2E-11::+
QFT00001_A_11 ACTCAGTAAGGTCAAGGTTAGAAAAATGCTTGGTGCATACTTGCTTTTGTTGTTTAATGGTAAATTAGGC 35.71 32 79 Schu4 FTT1211c hypothetical protein NT04FT0800::70::100.0::2.1E-11::+ FTT1211c::70::100.0::5.3E-12::+
QFT00001_A_12 TCGATAATGGGTATATATCGTAAAGCCCATATTCCAGACGGTATTGGTTACCAAGAGAAATATTATTTCT 34.29 32 108 LVS NT04FT0553 carbon-nitrogen hydrolase family protein NT04FT0553::70::100.0::1.2E-11::+ FTT0435::70::98.57143::2.5E-11::+
QFT00001_A_13 TTTAGCATGGATTATATCAGCTGGTCTAGCAGTTACAGTAGGTTGTTTCGTAGCTACTAGATTAGAAAAA 35.71 30 82 Schu4 FTT0277c conserved hypothetical membrane protein NT04FT0209::70::100.0::2.1E-11::+ FTT0277c::70::100.0::2.1E-11::+
QFT00001_A_14 GATATGATTGCTAATGCTATAAATAAAATATCTGTTTCAAGCTATGACTTTAAGTTATGCTTGAAAATAT 24.29 32 133 LVS NT04FT0707 hypothetical protein NT04FT0707::70::100.0::1.2E-11::+
QFT00001_A_15 AGGCTAAAGCTGGGGTAAATGTAATTACTAGTGCTTTTGGTGGGATTTTAATGGTAATCATAACCTTTTA 34.29 32 90 LVS NT04FT0181 hypothetical protein NT04FT0181::70::100.0::2.1E-11::+ FTT0225c::70::97.14286::9.1E-11::+
QFT00001_A_16 AAGTATTTTTCAGCTTTACAATTAACTACAGCCATTAGTTTATGTGTAAGTATTGATCTTTTACTTAATG 25.71 32 112 Schu4 FTT0551 conserved hypothetical protein, pseudogene NT04FT1088::70::100.0::1.2E-11::+ FTT0551::70::100.0::1.4E-11::+
QFT00001_A_17 ACAGTTTTTGTAGGGGTTGAACCATGTGTCAACCCTTCTTTAGCACCAATACCACAAGGGCTAACACATT 42.86 31 112 LVS NT04FT0424 hypothetical protein NT04FT0424::70::100.0::2.1E-11::+
QFT00001_A_18 GAAGATGTCCCGGAAGATTGGGAATGTCCTGACTGTGGTGTTAGTAAAGATGAATTTGAGCTTCTAGAAG 42.86 30 70 Schu4 FTT0595c Rubredoxin rubA NT04FT0937::70::98.57143::2.4E-11::+ FTT0595c::70::100.0::1.2E-11::+
QFT00001_A_19 AATCACAAATTCAATTAATGATTTTTATTATCAGTTGGCTAGTTTTACCAAGGTTTTAGAGTATTTATAA 22.86 32 87 LVS NT04FT0426 hypothetical protein NT04FT0426::70::100.0::2.1E-11::+
QFT00001_A_2 AATAGAATCTTTATATCTTTAATATTTATAATCTATAGCTATTTTAAGAGTAGTATAAAAATAACAAAAG 15.71 34 128 Schu4 FTT1740c hypothetical membrane protein, fragment FTT1740c::70::100.0::1.3E-11::+
QFT00001_A_20 TAGATTATCATTTGCTATTGAAATGCTTTAGTGATGGCGTTAATATTAATACATTGATGTGCTACTCCAG 31.43 30 87 F6168 32455359 hypothetical protein 32455359::70::100.0::1.2E-11::+
QFT00001_A_21 GCCAAAACTAAAGCAAATCGAGGCAGAAACAAGACCTGTAACTAGAGGTGTTGAAGTTTGTTTGATGTTC 40.0 30 119 LVS NT04FT0807 hypothetical protein NT04FT0807::70::100.0::2.1E-11::+ FTT1207::70::100.0::1.8E-11::-
QFT00001_A_22 ATACAGTATAGTGATTCCACAACAAAAAATAGAAAATGATAAAACTAAATTTGTATACTTAATAATATAT 18.57 33 92 LVS NT04FT0328 transposase NT04FT0328::70::100.0::1.2E-11::+
QFT00001_A_23 ATATTAAGATTTTAGATATATTATCATTCCAAAATAAAATTGATATTTTAATCTATAGATATAATAGCTA 14.29 35 132 LVS NT04FT0934 hypothetical protein NT04FT0934::70::100.0::2.1E-11::+
QFT00001_A_24 TATATTGACTTAAAAGATAAAAAAACTAATAGTTGTCCTTACTGTGGAACGACTTTTAAAGTAGAAAAAG 25.71 32 113 Schu4 FTT0264c conserved hypothetical protein NT04FT0162::70::100.0::1.3E-11::+ FTT0264c::70::100.0::1.2E-11::+
QFT00001_A_3 TATTAGTAGTTTTGTGATTGCTAGTTACTTTGGTAATACTATTATTGGTTATTTTGGGTTTTTGTTGATT 25.71 35 77 LVS NT04FT0865 hypothetical protein NT04FT0865::70::100.0::2.2E-11::+ FTT1163c::70::98.57143::1.3E-11::+
QFT00001_A_4 GTTAATGGTAGTAATTGCAATAATTGCAATCTTAGCAGCTGTAGCAATACCGATTTACTCAAACTACAAA 32.86 30 125 LVS NT04FT0427 hypothetical protein NT04FT0427::70::100.0::1.2E-11::+ FTT0889c::70::97.14286::3.1E-11::+
QFT00001_A_5 TTTATGGTTAATCTTTAGATTATTATTAATATTGGGATACGAATTAGAGCTAGCTAAATACGTTGGTAGA 27.14 33 107 LVS NT04FT1772 hypothetical protein NT04FT1772::70::100.0::2.2E-11::+ FTT1588c::70::100.0::8.8E-12::-

Total number of rows: 2831

Table truncated, full table size 565 Kbytes.




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