NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL4124 Query DataSets for GPL4124
Status Public on Aug 17, 2006
Title Agilent-014706 Human Promoter ChIP-on-Chip Set 244K, Microarray 1 of 2 G4489A (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
Catalog number G4489A
 
Description
Human Promoter ChIP-on-Chip Set 244K 1 of 2

Arrays of this design have barcodes that begin with 16014706 or 2514706.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Aug 17, 2006
Last update date Dec 06, 2012
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (130) GSM180122, GSM180124, GSM180315, GSM180317, GSM180320, GSM180322 
Series (25)
GSE7449 Genome-wide analysis reveals determinants of redundant and specific binding within a transcription factor family
GSE9367 IRF4 ChIP-on-chip for Myeloma Cell Lines
GSE11173 Defining a Chromatin Pattern That Characterizes DNA Hypermethylated Genes in Colon Cancer Cells
Relations
Alternative to GPL8169

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GB_RANGE NCBI Build 35.1 Accession.Version[start..end]

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GB_RANGE
1 267 912 HsCGHBrightCorner pos
2 267 910 DarkCorner pos
3 267 908 DarkCorner pos
4 267 906 A_17_P03529681 FALSE NM_004564 PET112L ref|NM_004564|ref|PET112L:2131|ens|ENST00000263985:2144 chr4:153037594-153037647 INSIDE NC_000004.9[153037594..153037647]
5 267 904 A_17_P01064881 FALSE NM_007266 XAB1 ref|NM_007266|ref|XAB1:2255|mgc|BC007451:2239 chr2:027765781-027765836 INSIDE NC_000002.9[027765781..027765836]
6 267 902 A_17_P07003827 FALSE mgc|BC034752:79 chr9:135461096-135461140 Unknown NC_000009.9[135461096..135461140]
7 267 900 A_17_P00143608 FALSE NM_024700 SNIP1 ref|NM_024700|ref|SNIP1:172|mgc|BC027040:172 chr1:037688802-037688846 INSIDE NC_000001.8[037688802..037688846]
8 267 898 A_17_P05837998 FALSE NM_004445 EPHB6 ref|NM_004445|ref|EPHB6:10252|mgc|BC110606:2527 chr7:142079855-142079905 INSIDE NC_000007.11[142079855..142079905]
9 267 896 A_17_P00011407 FALSE NM_005427 TP73 ref|NM_005427|ref|TP73:26612|ens|ENST00000346387:-3189|ens|ENST00000160698:26612 chr1:003618875-003618919 INSIDE NC_000001.8[003618875..003618919]
10 267 894 A_17_P15187012 FALSE NM_020247 CABC1 ref|NM_020247|ref|CABC1:332|mgc|BC005171:332 chr1:223435033-223435077 INSIDE NC_000001.8[223435033..223435077]
11 267 892 A_17_P07126947 FALSE NM_153714 C10orf67 ref|NM_153714|ref|C10orf67:-2764|mgc|BC035732:-2764 chr10:023676513-023676572 PROMOTER NC_000010.8[023676513..023676572]
12 267 890 A_17_P05008762 FALSE NM_153036 C6orf78 ref|NM_153036|ref|C6orf78:26878|ens|ENST00000343644:-1867|mgc|BC057769:26912 chr6:116983784-116983843 INSIDE NC_000006.9[116983784..116983843]
13 267 888 A_17_P00879288 FALSE NM_001005736 LYST ref|NM_001005736|ref|LYST:-2248|ens|ENST00000359334:-2272 chr1:232375200-232375259 PROMOTER NC_000001.8[232375200..232375259]
14 267 886 A_17_P04456174 FALSE NM_017785 FLJ20364 ref|NM_017785|ref|FLJ20364:-2017|mgc|BC012568:-2017 chr5:168941308-168941367 PROMOTER NC_000005.8[168941308..168941367]
15 267 884 A_17_P00689043 FALSE NM_002927 RGS13 ref|NM_002927|ref|RGS13:-115|ref|NM_144766:-115 chr1:189336794-189336853 PROMOTER NC_000001.8[189336794..189336853]
16 267 882 A_17_P00748918 FALSE NM_022731 NUCKS1 ref|NM_022731|ref|NUCKS1:2591|mgc|BC000805:2591 chr1:202448330-202448389 INSIDE NC_000001.8[202448330..202448389]
17 267 880 A_17_P04285063 FALSE NM_003687 PDLIM4 ref|NM_003687|ref|PDLIM4:-4930|mgc|BC003096:-4943 chr5:131616332-131616378 PROMOTER NC_000005.8[131616332..131616378]
18 267 878 A_17_P05078052 FALSE NM_004842 AKAP7 ref|NM_004842|ref|AKAP7:-987|ref|NM_138633:-987|ref|NM_016377:104056 chr6:131612180-131612239 PROMOTER NC_000006.9[131612180..131612239]
19 267 876 A_17_P04680536 FALSE NM_138928 MOCS1 ref|NM_138928|ref|MOCS1:-197|ref|NM_005943:-197|mgc|BC036839:4519|ens|ENST00000340692:6521 chr6:040003607-040003654 PROMOTER NC_000006.9[040003607..040003654]
20 267 874 A_17_P16025454 FALSE NM_001001656 OR9A4 ref|NM_001001656|ref|OR9A4:-1365|ens|ENST00000311336:-1365 chr7:141070472-141070516 PROMOTER NC_000007.11[141070472..141070516]

Total number of rows: 243504

Table truncated, full table size 42511 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap