GEO help: Mouse over screen elements for information.
Status
Public on Aug 17, 2006
Title
Agilent-014706 Human Promoter ChIP-on-Chip Set 244K, Microarray 1 of 2 G4489A (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G4489A
Description
Human Promoter ChIP-on-Chip Set 244K 1 of 2 Arrays of this design have barcodes that begin with 16014706 or 2514706. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Aug 17, 2006
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com
Phone
877-424-4536
URL
http://www.agilent.com
Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (130)
GSM180122 , GSM180124 , GSM180315 , GSM180317 , GSM180320 , GSM180322
GSM180325 ,
GSM180338 ,
GSM180340 ,
GSM180343 ,
GSM238443 ,
GSM238445 ,
GSM238447 ,
GSM238449 ,
GSM281579 ,
GSM281589 ,
GSM281698 ,
GSM281700 ,
GSM283906 ,
GSM283907 ,
GSM283908 ,
GSM283909 ,
GSM283910 ,
GSM346071 ,
GSM346072 ,
GSM346073 ,
GSM346074 ,
GSM346075 ,
GSM346076 ,
GSM346077 ,
GSM346078 ,
GSM346079 ,
GSM346080 ,
GSM346081 ,
GSM346082 ,
GSM346083 ,
GSM346084 ,
GSM346085 ,
GSM346086 ,
GSM346087 ,
GSM346088 ,
GSM346089 ,
GSM346090 ,
GSM374796 ,
GSM374797 ,
GSM374798 ,
GSM374799 ,
GSM374800 ,
GSM374801 ,
GSM374802 ,
GSM374803 ,
GSM374804 ,
GSM374805 ,
GSM374806 ,
GSM374807 ,
GSM375847 ,
GSM375853 ,
GSM402831 ,
GSM402833 ,
GSM402835 ,
GSM402837 ,
GSM402839 ,
GSM402841 ,
GSM402843 ,
GSM402845 ,
GSM402847 ,
GSM402849 ,
GSM402851 ,
GSM402853 ,
GSM402855 ,
GSM402857 ,
GSM402859 ,
GSM402861 ,
GSM402863 ,
GSM402865 ,
GSM442662 ,
GSM442664 ,
GSM442666 ,
GSM442668 ,
GSM468268 ,
GSM468269 ,
GSM570353 ,
GSM570355 ,
GSM570357 ,
GSM570359 ,
GSM585183 ,
GSM585184 ,
GSM634467 ,
GSM634468 ,
GSM635412 ,
GSM635414 ,
GSM639393 ,
GSM639394 ,
GSM639397 ,
GSM639398 ,
GSM661301 ,
GSM661303 ,
GSM661305 ,
GSM661307 ,
GSM661309 ,
GSM661311 ,
GSM661313 ,
GSM661315 ,
GSM661317 ,
GSM661319 ,
GSM661321 ,
GSM661323 ,
GSM661325 ,
GSM661327 ,
GSM661329 ,
GSM661331 ,
GSM661333 ,
GSM661335 ,
GSM661337 ,
GSM661339 ,
GSM661341 ,
GSM661343 ,
GSM661345 ,
GSM661347 ,
GSM934071 ,
GSM934072 ,
GSM934075 ,
GSM934076 ,
GSM969963 ,
GSM996301 ,
GSM996302 ,
GSM996303 ,
GSM996304 ,
GSM996305 ,
GSM1055160
Series (25)
GSE7449
Genome-wide analysis reveals determinants of redundant and specific binding within a transcription factor family
GSE9367
IRF4 ChIP-on-chip for Myeloma Cell Lines
GSE11173
Defining a Chromatin Pattern That Characterizes DNA Hypermethylated Genes in Colon Cancer Cells
GSE11245
Genome-Wide profile of c-Myc binding in HL60 cells
GSE13749
Genome-wide characterization of the transcriptional program of Myc-dependent transformation, ChIP-chip
GSE14264
Genome-wide characterization of the transcriptional program of Myc-dependent transformation
GSE15002
Identification of Myc target genes in xenograft tissue derived from human lung cancers
GSE15052
NPAS2 ChIP-on-chip in MCF7 cells
GSE15594
Distinctive Chromatin in Human Sperm Packages Genes that Guide Embryo Development
GSE15701
Distinctive Chromatin in Human Sperm Packages Genes that Guide Embryo Development: ChIP-chip
GSE17733
Delineation of EZH2 oncogenic functions in hepatocellular carcinoma
GSE18892
Silencing of AEBP1 in U87MG glial cells and Chip-chIP with AEBP1 antibody
GSE23170
ChIP-on-chip experiment from Ramos cells to analyze genome-wide CRTC2 binding sites in germinal center B cells
GSE23171
CRTC2 couples genotoxic stress and plasma cell differentiation in the germinal center
GSE23709
Poly(ADP-ribose) polymerase 3: a key regulator of ectodermal specification and neural crest development.
GSE25824
CpG Methylation profile of Invasive Prostate Cancer Cells compared to Non-invasive
GSE25884
Delineation of AR oncogenic functions in hepatocellular carcinoma
GSE26035
Chromatin-associated protein kinase C-0 regulates an inducible gene expression program and microRNAs in human T lymphocytes
GSE26861
Genomic Binding of Human Linker Histone H1.5 during differentiation (ChIP-chip)
GSE26979
Human Linker Histone H1.5
GSE38076
CpG Methylation profile of Invasive Pancreatic Cancer Cells compared to Non-invasive
GSE39490
Helicobacter pylori-mediated Epigenetic Dysregulation of FOXD3 Tumor-suppressive Cascade In Gastric Carcinogenesis [ChIP]
GSE39600
Helicobacter pylori-mediated Epigenetic Dysregulation of FOXD3 Tumor-suppressive Cascade In Gastric Carcinogenesis
GSE40554
Identifying chromatin associations with promyelocytic leukemia nuclear bodies using immunoTRAP
GSE43018
Identification of GATA1 transcriptional regulation in the megakaryoblastic cell line Meg01
Relations
Alternative to
GPL8169
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
GB_ACC
GenBankAccession
GENE_SYMBOL
Gene Symbol
GENE_NAME
Gene Name
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
CYTOBAND
Cytoband
DESCRIPTION
Description
GB_RANGE
NCBI Build 35.1 Accession.Version[start..end]
Data table
ID
COL
ROW
SPOT_ID
CONTROL_TYPE
GB_ACC
GENE_SYMBOL
GENE_NAME
ACCESSION_STRING
CHROMOSOMAL_LOCATION
CYTOBAND
DESCRIPTION
GB_RANGE
1
267
912
HsCGHBrightCorner
pos
2
267
910
DarkCorner
pos
3
267
908
DarkCorner
pos
4
267
906
A_17_P03529681
FALSE
NM_004564
PET112L
ref|NM_004564|ref|PET112L:2131|ens|ENST00000263985:2144
chr4:153037594-153037647
INSIDE
NC_000004.9[153037594..153037647]
5
267
904
A_17_P01064881
FALSE
NM_007266
XAB1
ref|NM_007266|ref|XAB1:2255|mgc|BC007451:2239
chr2:027765781-027765836
INSIDE
NC_000002.9[027765781..027765836]
6
267
902
A_17_P07003827
FALSE
mgc|BC034752:79
chr9:135461096-135461140
Unknown
NC_000009.9[135461096..135461140]
7
267
900
A_17_P00143608
FALSE
NM_024700
SNIP1
ref|NM_024700|ref|SNIP1:172|mgc|BC027040:172
chr1:037688802-037688846
INSIDE
NC_000001.8[037688802..037688846]
8
267
898
A_17_P05837998
FALSE
NM_004445
EPHB6
ref|NM_004445|ref|EPHB6:10252|mgc|BC110606:2527
chr7:142079855-142079905
INSIDE
NC_000007.11[142079855..142079905]
9
267
896
A_17_P00011407
FALSE
NM_005427
TP73
ref|NM_005427|ref|TP73:26612|ens|ENST00000346387:-3189|ens|ENST00000160698:26612
chr1:003618875-003618919
INSIDE
NC_000001.8[003618875..003618919]
10
267
894
A_17_P15187012
FALSE
NM_020247
CABC1
ref|NM_020247|ref|CABC1:332|mgc|BC005171:332
chr1:223435033-223435077
INSIDE
NC_000001.8[223435033..223435077]
11
267
892
A_17_P07126947
FALSE
NM_153714
C10orf67
ref|NM_153714|ref|C10orf67:-2764|mgc|BC035732:-2764
chr10:023676513-023676572
PROMOTER
NC_000010.8[023676513..023676572]
12
267
890
A_17_P05008762
FALSE
NM_153036
C6orf78
ref|NM_153036|ref|C6orf78:26878|ens|ENST00000343644:-1867|mgc|BC057769:26912
chr6:116983784-116983843
INSIDE
NC_000006.9[116983784..116983843]
13
267
888
A_17_P00879288
FALSE
NM_001005736
LYST
ref|NM_001005736|ref|LYST:-2248|ens|ENST00000359334:-2272
chr1:232375200-232375259
PROMOTER
NC_000001.8[232375200..232375259]
14
267
886
A_17_P04456174
FALSE
NM_017785
FLJ20364
ref|NM_017785|ref|FLJ20364:-2017|mgc|BC012568:-2017
chr5:168941308-168941367
PROMOTER
NC_000005.8[168941308..168941367]
15
267
884
A_17_P00689043
FALSE
NM_002927
RGS13
ref|NM_002927|ref|RGS13:-115|ref|NM_144766:-115
chr1:189336794-189336853
PROMOTER
NC_000001.8[189336794..189336853]
16
267
882
A_17_P00748918
FALSE
NM_022731
NUCKS1
ref|NM_022731|ref|NUCKS1:2591|mgc|BC000805:2591
chr1:202448330-202448389
INSIDE
NC_000001.8[202448330..202448389]
17
267
880
A_17_P04285063
FALSE
NM_003687
PDLIM4
ref|NM_003687|ref|PDLIM4:-4930|mgc|BC003096:-4943
chr5:131616332-131616378
PROMOTER
NC_000005.8[131616332..131616378]
18
267
878
A_17_P05078052
FALSE
NM_004842
AKAP7
ref|NM_004842|ref|AKAP7:-987|ref|NM_138633:-987|ref|NM_016377:104056
chr6:131612180-131612239
PROMOTER
NC_000006.9[131612180..131612239]
19
267
876
A_17_P04680536
FALSE
NM_138928
MOCS1
ref|NM_138928|ref|MOCS1:-197|ref|NM_005943:-197|mgc|BC036839:4519|ens|ENST00000340692:6521
chr6:040003607-040003654
PROMOTER
NC_000006.9[040003607..040003654]
20
267
874
A_17_P16025454
FALSE
NM_001001656
OR9A4
ref|NM_001001656|ref|OR9A4:-1365|ens|ENST00000311336:-1365
chr7:141070472-141070516
PROMOTER
NC_000007.11[141070472..141070516]
Total number of rows: 243504 Table truncated, full table size 42511 Kbytes .
Supplementary data files not provided