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Platform GPL3979 Query DataSets for GPL3979
Status Public on Jul 12, 2006
Title [Canine] Affymetrix Canine Genome 1.0 Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Canis lupus familiaris
Manufacturer Affymetrix
Manufacture protocol Probe sets for over 21,700 transcripts provide comprehensive coverage of the Canis familiaris genome. Sequence information for the GeneChip Canine Genome Array includes public content from GenBank® (release 137.0, August 2003), dbEST (October 2003), and proprietary beagle sequence content licensed from LION bioscience AG. LION bioscience sequence information was derived from sequences in cDNA libraries for the following eleven tissues: testis, ovary, brain, embryo, liver, spleen, kidney, muscle, aorta, uterus, and jejunum.
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

Array has been discontinued by Affymetrix
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=canine
http://www.affymetrix.com/analysis/index.affx
Contributor(s) Ojaimi C, Qanud K, Hintze TH, Recchia FA
Submission date Jul 06, 2006
Last update date Jun 25, 2010
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (167) GSM118670, GSM118675, GSM118678, GSM118680, GSM118683, GSM118685 
Series (13)
GSE5247 Altered expression of a limited number of genes contributes to cardiac decompensation during chronic pacing in dogs
GSE5260 Hyperhomocysteinemia alters the cardiac substrate metabolism by impairing NO bioavailability through oxidative stress
GSE9794 Progression of heart failure induced by tachycardia

Data table header descriptions
ID Affymetrix Probe Set ID
GB_ACC GenBank Accession Number
CLONE_ID EST clone id
SPOT_ID
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type Indicates whether the sequence is an Exemplar, Consensus or Control sequence. An Exemplar is a single nucleotide sequence taken directly from a public database. This sequence could be an mRNA or EST. A Consensus sequence, is a nucleotide sequence assembled by Affymetrix, based on one or more sequence taken from a public database.
Sequence Source The database from which the sequence used to design this probe set was taken.
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Target Description GenBank description associated with the representative public identifier. Blank for some probe sets.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Transcript IDGene Ontology Biological Process
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".

Data table
ID GB_ACC CLONE_ID SPOT_ID Species Scientific Name Annotation Date Sequence Type Sequence Source Representative Public ID Target Description Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript IDGene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function
1582358_s_at AF091136.1 Canis familiaris Mar 11, 2009 Consensus sequence GenBank AF091136.1 gb:AF091136.1 /DB_XREF=gi:5690209 /TID=CfAffx.10.47 /CNT=1 /FEA=mRNA /TIER=ConsEnd /STK=0 /DEF=Canis familiaris glyceraldehyde-3-phosphate dehydrogenase mRNA, partial cds. glyceraldehyde-3-phosphate dehydrogenase GAPDH 403755 NM_0010031420006006 // glucose metabolic process // inferred from electronic annotation /// 0006096 // glycolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0008943 // glyceraldehyde-3-phosphate dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0051287 // NAD binding // inferred from electronic annotation
1582360_at M35301.1 Canis familiaris Mar 11, 2009 Consensus sequence GenBank M35301.1 gb:M35301.1 /DB_XREF=gi:164041 /TID=CfAffx.27659.1 /CNT=55 /FEA=FLmRNA /TIER=FL+Stack /STK=53 /DEF=Canine phospholipase A-2 mRNA, complete cds. /FL=gb:M35301.1 phospholipase A2, group IB (pancreas) PLA2G1B 404011 NM_0010033200006644 // phospholipid metabolic process // inferred from electronic annotation /// 0016042 // lipid catabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0004623 // phospholipase A2 activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
1582361_at L25052.1 Canis familiaris Mar 11, 2009 Consensus sequence GenBank L25052.1 gb:L25052.1 /DB_XREF=gi:459745 /TID=CfAffx.27673.1 /CNT=48 /FEA=FLmRNA /TIER=FL+Stack /STK=48 /DEF=Canis familiaris protein translocation complex beta subunit mRNA, complete cds. /PROD=protein translocation complex beta subunit /FL=gb:L25052.1 Sec61 beta subunit Sec61b 404018 NM_0010033260006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0065002 // intracellular protein transmembrane transport // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // traceable author statement
1582362_at M29611.1 Canis familiaris Mar 11, 2009 Consensus sequence GenBank M29611.1 gb:M29611.1 /DB_XREF=gi:164022 /TID=CfAffx.592.1 /CNT=58 /FEA=FLmRNA /TIER=FL+Stack /STK=47 /DEF=C.familiaris MHC class II DLA-DR-beta-1 gene, complete cds. /FL=gb:M29611.1 MHC class II DLA DRB1 beta chain DLA-DRB1 474860 NM_0010147680002504 // antigen processing and presentation of peptide or polysaccharide antigen via MHC class II // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042613 // MHC class II protein complex // inferred from electronic annotation
1582363_x_at M59172.1 Canis familiaris Mar 11, 2009 Consensus sequence GenBank M59172.1 gb:M59172.1 /DB_XREF=gi:164061 /GEN=SAA /TID=CfAffx.169.1 /CNT=44 /FEA=FLmRNA /TIER=FL+Stack /STK=40 /DEF=Canis familiaris serum amyloid A-like protein (SAA) mRNA, complete cds. /PROD=serum amyloid A-like protein /FL=gb:M59172.1 serum amyloid A1 SAA1 403585 NM_001003050 /// XM_8504660006953 // acute-phase response // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0005319 // lipid transporter activity // inferred from electronic annotation
1582364_at AF019759.1 Canis familiaris Mar 11, 2009 Consensus sequence GenBank AF019759.1 gb:AF019759.1 /DB_XREF=gi:2425090 /GEN=GUSB /TID=CfAffx.5411.1 /CNT=37 /FEA=FLmRNA /TIER=FL+Stack /STK=35 /DEF=Canis familiaris beta-glucuronidase (GUSB) mRNA, complete cds. /PROD=beta-glucuronidase /FL=gb:AF019759.1 glucuronidase, beta GUSB 403831 NM_0010031910005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004566 // beta-glucuronidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation
1582365_s_at AF019759.1 Canis familiaris Mar 11, 2009 Consensus sequence GenBank AF019759.1 gb:AF019759.1 /DB_XREF=gi:2425090 /GEN=GUSB /TID=CfAffx.5411.1 /CNT=37 /FEA=FLmRNA /TIER=FL+Stack /STK=35 /DEF=Canis familiaris beta-glucuronidase (GUSB) mRNA, complete cds. /PROD=beta-glucuronidase /FL=gb:AF019759.1 glucuronidase, beta GUSB 403831 NM_0010031910005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation 0005764 // lysosome // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity, hydrolyzing O-glycosyl compounds // inferred from electronic annotation /// 0004566 // beta-glucuronidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0043169 // cation binding // inferred from electronic annotation
1582366_at AF045773.1 Canis familiaris Mar 11, 2009 Consensus sequence GenBank AF045773.1 gb:AF045773.1 /DB_XREF=gi:4164449 /TID=CfAffx.27565.1 /CNT=32 /FEA=FLmRNA /TIER=FL+Stack /STK=32 /DEF=Canis familiaris adrenomedullin precursor, mRNA, complete cds. /PROD=adrenomedullin precursor /FL=gb:AF045773.1 gb:U96127.1 adrenomedullin ADM 403817 NM_001003183 0005576 // extracellular region // inferred from electronic annotation 0005179 // hormone activity // inferred from electronic annotation
1582367_at AF447922.1 Canis familiaris Mar 11, 2009 Consensus sequence GenBank AF447922.1 gb:AF447922.1 /DB_XREF=gi:25990915 /TID=CfAffx.27395.1 /CNT=27 /FEA=FLmRNA /TIER=FL+Stack /STK=27 /DEF=Canis familiaris Rh type B glycoprotein mRNA, complete cds. /PROD=Rh type B glycoprotein /FL=gb:AF447923.1 gb:AF447922.1 Rh family, B glycoprotein RHBG 403538 NM_0010030170006810 // transport // inferred from electronic annotation /// 0015696 // ammonium transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0016323 // basolateral plasma membrane // inferred from electronic annotation /// 0030659 // cytoplasmic vesicle membrane // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation
1582368_at AF498324.1 Canis familiaris Mar 11, 2009 Consensus sequence GenBank AF498324.1 gb:AF498324.1 /DB_XREF=gi:28190691 /GEN=Umod /TID=CfAffx.27382.1 /CNT=27 /FEA=FLmRNA /TIER=FL+Stack /STK=26 /DEF=Canis familiaris uromodulin precursor (Umod) mRNA, complete cds. /PROD=uromodulin precursor /FL=gb:AF498324.1 uromodulin UMOD 403510 NM_001003003 0005576 // extracellular region // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0031225 // anchored to membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation
1582369_at U01153.1 Canis familiaris Mar 11, 2009 Consensus sequence GenBank U01153.1 gb:U01153.1 /DB_XREF=gi:403496 /TID=CfAffx.50.1 /CNT=45 /FEA=FLmRNA /TIER=FL+Stack /STK=24 /DEF=Canis familiaris GRP94 mRNA, complete cds. /PROD=GRP94 /FL=gb:U01153.1 heat shock protein 90kDa beta (Grp94), member 1 HSP90B1 404019 NM_0010033270006457 // protein folding // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005788 // endoplasmic reticulum lumen // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from electronic annotation /// 0042470 // melanosome // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from electronic annotation
1582370_at AF109151.1 Canis familiaris Mar 11, 2009 Consensus sequence GenBank AF109151.1 gb:AF109151.1 /DB_XREF=gi:5852400 /GEN=PDE6D /TID=CfAffx.13038.1 /CNT=35 /FEA=FLmRNA /TIER=FL+Stack /STK=24 /DEF=Canis familiaris cGMP-phosphodiesterase delta subunit (PDE6D) mRNA, complete cds. /PROD=cGMP-phosphodiesterase delta subunit /FL=gb:AF109151.1 gb:AY029186.1 phosphodiesterase 6D, cGMP-specific, rod, delta PDE6D 403781 NM_0010031560007601 // visual perception // inferred from electronic annotation /// 0050896 // response to stimulus // inferred from electronic annotation 0004114 // 3',5'-cyclic-nucleotide phosphodiesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation
1582371_at M32283.1 Canis familiaris Mar 11, 2009 Consensus sequence GenBank M32283.1 gb:M32283.1 /DB_XREF=gi:164004 /TID=CfAffx.436.1 /CNT=24 /FEA=FLmRNA /TIER=FL+Stack /STK=21 /DEF=Dog MHC class I DLA-A9A9 alpha-chain mRNA, complete cds. /FL=gb:M32283.1 MHC class I DLA-88 dla88 474836 NM_0010147670002474 // antigen processing and presentation of peptide antigen via MHC class I // inferred from electronic annotation /// 0006955 // immune response // inferred from electronic annotation /// 0019882 // antigen processing and presentation // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 0042612 // MHC class I protein complex // inferred from electronic annotation
1582372_at U05780.1 Canis familiaris Mar 11, 2009 Consensus sequence GenBank U05780.1 gb:U05780.1 /DB_XREF=gi:458276 /TID=CfAffx.27637.1 /CNT=18 /FEA=FLmRNA /TIER=FL+Stack /STK=18 /DEF=Canis familiaris zona pellucida C protein mRNA, complete cds. /PROD=zona pellucida C protein /FL=gb:U05780.1 zona pellucida glycoprotein 3 (sperm receptor) ZP3 403894 NM_0010032240007338 // single fertilization // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation
1582373_at AF077821.1 Canis familiaris Mar 11, 2009 Consensus sequence GenBank AF077821.1 gb:AF077821.1 /DB_XREF=gi:3901273 /TID=CfAffx.399.1 /CNT=17 /FEA=FLmRNA /TIER=FL+Stack /STK=15 /DEF=Canis familiaris inducible nitric oxide synthase mRNA, complete cds. /PROD=inducible nitric oxide synthase /FL=gb:AF077821.1 nitric oxide synthase 2, inducible NOS2 403822 NM_0010031860006801 // superoxide metabolic process // inferred from sequence or structural similarity /// 0006809 // nitric oxide biosynthetic process // inferred from electronic annotation /// 0042742 // defense response to bacterium // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred from electronic annotation 0004517 // nitric-oxide synthase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from sequence or structural similarity /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0010181 // FMN binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050660 // FAD binding // inferred from electronic annotation /// 0050661 // NADP binding // inferred from electronic annotation
1582374_at AF016248.1 Canis familiaris Mar 11, 2009 Consensus sequence GenBank AF016248.1 gb:AF016248.1 /DB_XREF=gi:3002535 /TID=CfAffx.27462.1 /CNT=19 /FEA=FLmRNA /TIER=FL+Stack /STK=13 /DEF=Canis familiaris cytochrome P450 2C41 mRNA, complete cds. /PROD=cytochrome P450 2C41 /FL=gb:AF016248.1 cytochrome P450 2C41 CYP2C41 415123 NM_0010033340055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050381 // unspecific monooxygenase activity // inferred from electronic annotation
1582375_at DG42-86f3 Canis familiaris Mar 11, 2009 Consensus sequence Affymetrix Proprietary Database DG42-86f3-1163m16.r1ca affx:DG42-86f3-1163m16.r1ca /DB_XREF= /CLONE=affx:DG42-86f3-1163m16 /TID=CfAffx.27462.1 /CNT=19 /FEA=FLmRNA /TIER=Stack /STK=6 /DEF=Cytochrome P450 2C41 (EC 1.14.14.1) (CYPIIC41). /FL=gb:AF016248.1 cytochrome P450 2C41 CYP2C41 415123 NM_0010033340055114 // oxidation reduction // inferred from electronic annotation 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005792 // microsome // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0020037 // heme binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050381 // unspecific monooxygenase activity // inferred from electronic annotation
1582376_at AF038862.1 Canis familiaris Mar 11, 2009 Consensus sequence GenBank AF038862.1 gb:AF038862.1 /DB_XREF=gi:4090989 /GEN=GNGT2 /TID=CfAffx.27448.1 /CNT=12 /FEA=FLmRNA /TIER=FL+Stack /STK=12 /DEF=Canis familiaris transducin gamma subunit (GNGT2) mRNA, complete cds. /PROD=transducin gamma subunit /FL=gb:AF038862.1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 GNGT2 403617 NM_0010030710007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004871 // signal transducer activity // inferred from electronic annotation
1582377_at AF167075.2 Canis familiaris Mar 11, 2009 Consensus sequence GenBank AF167075.2 gb:AF167075.2 /DB_XREF=gi:6978306 /GEN=EAAC1 /TID=CfAffx.19033.1 /CNT=11 /FEA=FLmRNA /TIER=FL+Stack /STK=10 /DEF=Canis familiaris glutamate transporter (EAAC1) mRNA, complete cds. /PROD=glutamate transporter /FL=gb:AF167075.2 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 SLC1A1 403751 NM_0010031390006835 // dicarboxylic acid transport // inferred from electronic annotation 0016020 // membrane // inferred from electronic annotation 0017153 // sodium:dicarboxylate symporter activity // inferred from electronic annotation
1582378_at S45367.1 Canis familiaris Mar 11, 2009 Consensus sequence GenBank S45367.1 gb:S45367.1 /DB_XREF=gi:256177 /GEN=centractin /TID=CfAffx.27554.1 /CNT=22 /FEA=FLmRNA /TIER=FL+Stack /STK=8 /DEF=Canis familiaris centractin mRNA, complete cds. /PROD=centractin /FL=gb:S45367.1 ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) ACTR1A 403791 NM_001003164 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005813 // centrosome // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation

Total number of rows: 23913

Table truncated, full table size 7873 Kbytes.






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