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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jan 14, 2006 |
| Title |
CMF/NKI produced Human 18K cDNA array, spots 1-19200 |
| Technology type |
spotted DNA/cDNA |
| Distribution |
non-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
CMF/NKI (Amsterdam, The Netherlands) |
| Manufacture protocol |
Spotted PCR products
|
| Support |
glass |
| |
|
| |
|
| Web link |
http://microarrays.nki.nl/
|
| Contributor(s) |
Hendriksen P, Dits N, Jenster G |
| Submission date |
Jan 11, 2006 |
| Last update date |
Jan 17, 2013 |
| Contact name |
Peter Hendriksen |
| E-mail(s) |
peter.hendriksen@wur.nl
|
| Organization name |
Wageningen University & Research
|
| Department |
RIKILT
|
| Street address |
Akkermaalsbos 2
|
| City |
Wageningen |
| ZIP/Postal code |
6708 WB |
| Country |
Netherlands |
| |
|
| Samples (60)
|
GSM91874, GSM91875, GSM91879, GSM92195, GSM92196, GSM92197
GSM92198, GSM92199, GSM92533, GSM92534, GSM92535, GSM92536, GSM92537, GSM92538, GSM92539, GSM92540, GSM92541, GSM92542, GSM92543, GSM92544, GSM92545, GSM92546, GSM92547, GSM92548, GSM92549, GSM92550, GSM92551, GSM92552, GSM92553, GSM92554, GSM92555, GSM92556, GSM92557, GSM92558, GSM92559, GSM92560, GSM92561, GSM92562, GSM92563, GSM92564, GSM92565, GSM92566, GSM92567, GSM92568, GSM92569, GSM92570, GSM92571, GSM92572, GSM92573, GSM92574, GSM92575, GSM92576, GSM92577, GSM92578, GSM92579, GSM92580, GSM92581, GSM92582, GSM92583, GSM92584
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| Series (2) |
| GSE4027 |
Prostate cancer cell line LNCaP treated for 2, 4, 6, 8 h with the synthetic androgen R1881 (1nM) |
| GSE4084 |
Human prostate cancer xenografts on intact mice or after castration. |
|
| Data table header descriptions |
| ID |
|
| GB_ACC |
GB_ACC used for gene identifation |
| SPOT_ID |
|
| UNIGENE |
UniGene_Hs on build #88 |
| Name |
Gene Name |
| Symbol |
|
| REFSEQ |
|
| Indication_AC1_2_RefSeq_used_for_gene Identification |
|
| Originally_provided_GenBank_Acc_1 |
GB-ACC provided by the manufacturers of the array |
| Originally_provided_GenBank_Acc_2 |
2nd GB-ACC provided by the manufacturers of the array |
| BLAST |
BLAST search was done for some GB-ACCs that were absent in Unigene |
| Potentially ALU |
ALU-warning based on Unigene or on co-clustering with ALU-repeats containing spots. |
| Metarow |
|
| Metacol |
|
| Subrow |
|
| Subcol |
|
| Data table |
| ID |
GB_ACC |
SPOT_ID |
UNIGENE |
Name |
Symbol |
REFSEQ |
Indication_AC1_2_RefSeq_used_for_gene Identification |
Originally_provided_GenBank_Acc_1 |
Originally_provided_GenBank_Acc_2 |
BLAST |
Potentially ALU |
Metarow |
Metacol |
Subrow |
Subcol |
| 1 |
W96463 |
|
193132 |
LOC440186 |
|
CN284545 |
AC1 |
W96463 |
|
|
|
1 |
1 |
1 |
1 |
| 2 |
N51917 |
|
47367 |
Fem-1 homolog c (C.elegans) |
FEM1C |
NM_020177 |
AC1 |
N51917 |
|
|
|
1 |
1 |
1 |
2 |
| 3 |
AA056580 |
|
217409 |
Chromosome 10 open reading frame 83 |
C10orf83 |
BC093023 |
AC1 |
AA056580 |
|
|
|
1 |
1 |
1 |
3 |
| 4 |
AA129861 |
|
239444 |
Microtubule-associated protein 6 |
MAP6 |
NM_207577 |
AC1 |
AA129861 |
|
|
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1 |
1 |
1 |
4 |
| 5 |
|
blank |
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1 |
1 |
1 |
5 |
| 6 |
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blank |
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|
1 |
1 |
1 |
6 |
| 7 |
|
blank |
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|
1 |
1 |
1 |
7 |
| 8 |
|
blank |
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|
1 |
1 |
1 |
8 |
| 9 |
|
blank |
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|
1 |
1 |
1 |
9 |
| 10 |
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blank |
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|
1 |
1 |
1 |
10 |
| 11 |
|
blank |
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|
1 |
1 |
1 |
11 |
| 12 |
|
blank |
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|
1 |
1 |
1 |
12 |
| 13 |
|
blank |
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1 |
1 |
1 |
13 |
| 14 |
|
blank |
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|
1 |
1 |
1 |
14 |
| 15 |
|
blank |
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|
1 |
1 |
1 |
15 |
| 16 |
|
blank |
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1 |
1 |
1 |
16 |
| 17 |
|
blank |
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1 |
1 |
1 |
17 |
| 18 |
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blank |
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1 |
1 |
1 |
18 |
| 19 |
|
blank |
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1 |
1 |
1 |
19 |
| 20 |
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blank |
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1 |
1 |
1 |
20 |
Total number of rows: 19200
Table truncated, full table size 1797 Kbytes.
| Supplementary data files not provided |
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