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Platform GPL3307 Query DataSets for GPL3307
Status Public on Feb 20, 2006
Title ABI Human Genome Survey Microarray v2.0
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Applied Biosystems
Manufacture protocol see manufacturer's website
 
 
Submission date Jan 05, 2006
Last update date Jan 18, 2013
Contact name Bjorn Grinde
E-mail(s) bjgr@fhi.no
Phone +47 22042420
Fax +47 22042447
Organization name Norwegian Institute of Public Health
Department Infectious Disease Control
Street address Geitmyrsveien 75
City Oslo
State/province Oslo
ZIP/Postal code 0496
Country Norway
 
Samples (49) GSM90667, GSM90860, GSM90861, GSM90862, GSM90863, GSM90864 
Series (5)
GSE3983 Effects on gene expression of a medicinal extract from Agaricus blazei in patients with hepatitis C infection
GSE11553 Analysis of gene expression in different T cell clones
GSE15867 Analysis of human myeloma cell lines expressing beta 3 integrin

Data table header descriptions
ID
Gene_Symbol
Cytoband
EC
GB_ACC GenBank accession
SPOT_ID
Gene_Name
Gene_Product
RefSeq_NM
Gene_ID Primary id for the probe
PubMed
SwissProt
GO_Biological_Process
GO_Molecular_Function
GO_Cellular_Component
RefSeq_All
UniGene Unigene number
Primary_Gene_ID
Status
RefSeq_NP
GENE Entrez GENE ID
GB_Accession
OMIM
Panther_Family_Name
Panther_Subfamily_Name
Panther_Function
Panther_Process
Chromosome_Number
hCT List of transcripts associated with the primary gene id
hCP List of protein sequences associated with the primary gene id
hCG List of genes associated with the primary gene id
Orthologs

Data table
ID Gene_Symbol Cytoband EC GB_ACC SPOT_ID Gene_Name Gene_Product RefSeq_NM Gene_ID PubMed SwissProt GO_Biological_Process GO_Molecular_Function GO_Cellular_Component RefSeq_All UniGene Primary_Gene_ID Status RefSeq_NP GENE GB_Accession OMIM Panther_Family_Name Panther_Subfamily_Name Panther_Function Panther_Process Chromosome_Number hCT hCP hCG Orthologs
100002 Celera: hCG1643199.4;hCG1643199.4 hCG1643199.4;hCG1643199.4 hCG1643199.4 pseudogene RIBONUCLEOPROTEIN HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1-RELATED Nucleic acid binding -> Ribonucleoprotein Nucleoside, nucleotide and nucleic acid metabolism -> RNA localization 2 hCT1643326.4 hCP1623857.4 hCG1643199.4
100003 Celera: hCG2041918;hCG2041918 hCG2041918;hCG2041918 hCG2041918 current 10 hCT2347149 hCP1913012 hCG2041918
100027 ZNF192 6p21.3 NM_006298 zinc finger protein 192 zinc finger protein 192 NM_006298.1 hCG31426.2;hCG31426.2 9244436;10567577 O95201;P51523;P17027;P13682;Q15776 GO:0006355:regulation of transcription, DNA-dependent GO:0008270:zinc ion binding;GO:0003700:transcription factor activity;GO:0005515:protein binding GO:0005634:nucleus NM_006298.1 57679 hCG31426.2 current NP_006289.1 7745 U57796.1 602240 KRAB-RELATED C2H2-TYPE ZINC-FINGERS ZINC FINGER PROTEIN 192 Transcription factor -> Zinc finger transcription factor -> KRAB box transcription factor Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation;Cell proliferation and differentiation 6 hCT2281900;hCT2281901;hCT22606.3 hCP1853147;hCP1853155;hCP45180.2 hCG31426.2 rCG23061;mCG121067.1
100036 ZNF532 18q21.32 NM_018181 zinc finger protein 532 zinc finger protein 532 NM_018181.3 hCG1979099.1;hCG1820838.1;hCG1994281.1;hCG1979099.1;hCG1989348 10997877;12477932;14702039 Q92610 GO:0008270:zinc ion binding;GO:0003676:nucleic acid binding GO:0005634:nucleus NM_018181.3 368756 hCG1979099.1 current NP_060651.2 55205 AK001559.1;AB046849.1;BC036366.1;AK122835.1;AK128058.1;AY039256.1 FAMILY NOT NAMED SUBFAMILY NOT NAMED Molecular function unclassified Biological process unclassified 18 hCT2250826;hCT2250828.1;hCT2250829.1;hCT2250830.1 hCP1860188.1;hCP1860190.1;hCP1860184;hCP1860191 hCG1820838.1;hCG1994281.1;hCG1979099.1;hCG1989348 rCG46785;mCG12625.1
100037 UBE2I 16p13.3 6.3.2.19 NM_194260 ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast) ubiquitin-conjugating enzyme E2I NM_194260.1 hCG42687.4;hCG42687.4 10806190;9067428;14517060;8565643;10737800;9197546;12200128;15087395;8610150;8668529;8668125;11877416;8798754;12477932;9333025;14702039;12021447;12813045 GO:0006511:ubiquitin-dependent protein catabolism;GO:0006512:ubiquitin cycle GO:0016874:ligase activity;GO:0004840:ubiquitin conjugating enzyme activity;GO:0004842:ubiquitin-protein ligase activity GO:0000795:synaptonemal complex NM_194260.1;NM_003345.3;NM_194261.1;NM_194259.1 302903 hCG42687.4 current NP_919237.1;NP_919236.1;NP_919235.1;NP_003336.1 7329 BT006932.1;AL031714.8_CDS_1;U66867.1;D45050.1;X96427.1;U38785.1;AE006466.1_CDS_10;U31882.1;AK093616.1;U31933.1;BC051289.1;BC000744.2;BC000427.2;BC004437.1;BC004429.1;U29092.1;U45328.1;BT007010.1;U66818.1;AJ002385.1 601661 UBIQUITIN-CONJUGATING ENZYME E2 UBIQUITIN-CONJUGATING ENZYME E2-18 KD UBCH9 Ligase -> Other ligase Protein metabolism and modification 16 hCT1955290.1;hCT33970.3;hCT1967628.1;hCT1955289.1;hCT1967629.1 hCP52016.1;hCP1780869.1;hCP1762093;hCP1780863;hCP1762098 hCG42687.4 rCG35051.1;mCG121199.1;mCG17660.2
100039 ANAPC7 12q13.12 NM_016238 anaphase promoting complex subunit 7 anaphase-promoting complex subunit 7 NM_016238.1 hCG2015782;hCG2015782 9110174;9469815;12477932;14702039;8619474 Q9UJX3 GO:0007067:mitosis;GO:0000910:cytokinesis;GO:0000074:regulation of cell cycle GO:0005680:anaphase-promoting complex NM_016238.1 530379 hCG2015782 current NP_057322.1 51434 BC017316.2;BC040130.1;AK021809.1;AX881615.1_CDS_1;AF191340.1;BC009498.2 606949 TPR-DOMAIN CONTAINING PROTEIN ANAPHASE-PROMOTING COMPLEX SUBUNIT 7 Ligase -> Other ligase Cell cycle -> Mitosis;Cell cycle -> Cell cycle control 12 hCT2308302;hCT2308303 hCP1881089;hCP1881087 hCG2015782 rCG21851.1;mCG12170.2
100043 Celera: R26_hCT1645588.2;R26_hCT1645588.2 R26_hCT1645588.2;R26_hCT1645588.2 R26_hCT1645588.2 obsolete R26_hCT1645588.2
100044 FGF1 5q31 NM_000800 fibroblast growth factor 1 (acidic) fibroblast growth factor 1 (acidic) isoform 1 precursor;fibroblast growth factor 1 (acidic) isoform 2 precursor;fibroblast growth factor 1 (acidic) isoform 3 precursor NM_000800.2 hCG36953.3;hCG36953.3 1372643;12788899;10373120;12008951;9501919;7542239;2393407;2590193;14673954;12118009;12417591;1693186;7680120;12484774;1717925;12871334;3523756;2474753;3778488;12057924;12145206;12750963;7504343;11847269;12477932;12440521 GO:0001525:angiogenesis;GO:0008283:cell proliferation;GO:0007165:signal transduction;GO:0007267:cell-cell signaling;GO:0009653:morphogenesis;GO:0000074:regulation of cell cycle GO:0008083:growth factor activity;GO:0008201:heparin binding GO:0005615:extracellular space NM_000800.2;NM_033137.1;NM_033136.1 278954 hCG36953.3 current NP_000791.1;NP_149128.1;NP_149127.1 2246 AF211169.1;X51943.1 131220 FAMILY NOT NAMED;HEPARIN-BINDING GROWTH FACTOR FAMILY MEMBER/FGF gb def: acid fibroblast growth factor-like protein [homo sapiens];HEPARIN-BINDING GROWTH FACTOR 1 Molecular function unclassified;Signaling molecule -> Growth factor Developmental processes -> Mesoderm development -> Angiogenesis;Developmental processes -> Mesoderm development -> Muscle development;Signal transduction -> Cell surface receptor mediated signal transduction;Signal transduction -> Intracellular signaling cascade -> MAPKKK cascade;Signal transduction -> Cell communication -> Ligand-mediated signaling;Biological process unclassified;Cell cycle -> Cell cycle control 5 hCT2252418;hCT2252419;hCT2252422;hCT2252421;hCT2252420;hCT28183.3 hCP1894549;hCP1894547;hCP47256.1;hCP1894545;hCP1894544;hCP1894548 hCG36953.3 rCG49437;mCG18337.3
100045 NM_198453 NM_198453.1 hCG1776836.3;hCG1776836.3 NM_198453.1 hCG1776836.3 current NP_940855.1 AB040936.1;BX648163.1;BC034225.1;AK128517.1 DYNEIN HEAVY CHAIN DYNEIN HEAVY CHAIN Cytoskeletal protein -> Microtubule family cytoskeletal protein -> Microtubule binding motor protein Cell structure and motility -> Cell motility 17 hCT2340623;hCT2269171;hCT1815550.2 hCP1708966.3;hCP1891070;hCP1907207 hCG1776836.3 rCG34735;mCG120758
100051 Celera: hCG1642464.3;hCG1642464.3 hCG1642464.3;hCG1642464.3 hCG1642464.3 current SMALL GTPASE RAP Select regulatory molecule -> G-protein -> Small GTPase Intracellular protein traffic -> Exocytosis -> Regulated exocytosis;Intracellular protein traffic -> Endocytosis -> Receptor mediated endocytosis;Signal transduction 3 hCT1642591.3 hCP1617625.3 hCG1642464.3
100052 CAMK1G 1q32-q41 NM_020439 calcium/calmodulin-dependent protein kinase IG calcium/calmodulin-dependent protein kinase IG NM_020439.2 hCG22993.3;hCG22993.3 10645953;12477932;14702039;12637513 GO:0006468:protein amino acid phosphorylation GO:0005524:ATP binding;GO:0004674:protein serine/threonine kinase activity;GO:0016740:transferase activity NM_020439.2 199068 hCG22993.3 current NP_065172.1 57172 AX399682.1_CDS_1;BC032787.1;AF428261.1;AL049688.1 SERINE/THREONINE PROTEIN KINASE CALMODULIN-DEPENDENT PROTEIN KINASE Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase Signal transduction;Protein metabolism and modification -> Protein modification -> Protein phosphorylation 1 hCT2261680;hCT2261683;hCT14094.3 hCP40412.2;hCP1799420;hCP1799419 hCG22993.3 rCG20457.1;mCG16879.2
100057 BC027612 BC027612.2 hCG1793655.1;hCG1793655.1 hCG1793655.1 current BC027612.2;AK098698.1 FAMILY NOT NAMED SUBFAMILY NOT NAMED Molecular function unclassified Biological process unclassified 12 hCT1832915.1 hCP1734768 hCG1793655.1 mCG142124;rCG49126
100058 MGC2963 17p13.3 NM_031298 hypothetical protein MGC2963 hypothetical protein MGC2963 NM_031298.1 hCG33215.3;hCG33215.3 12477932 NM_031298.1 30011 hCG33215.3 current NP_112588.1 83460 BC001409.1 17 hCT24408.2 hCP46567.2 hCG33215.3 mCG6646;rCG34768
100060 ZMYND12 1p34.1 NM_032257 zinc finger, MYND domain containing 12 zinc finger, MYND domain containing 12 NM_032257.3 hCG22998.3;hCG22998.3 11230166;12477932;14702039 NM_032257.3 294009 hCG22998.3 current NP_115633.2 84217 AK057384.1;BC024186.2;AL136858.1 1 hCG22998.3 rCG50400;mCG4214.1
100062 APOBEC3F 22q13.1-q13.2 NM_145298 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F NM_145298.3 hCG2039675;hCG2039675;hCG2039987 12683974;11863358;12477932 Q8IUX4;Q9UH17 NM_145298.3 337667 hCG2039675 current NP_660341.2 200316 BC038808.1 CYTIDINE DEAMINASE RELATED PHORBOLIN-RELATED Hydrolase -> Other hydrolase Biological process unclassified 22 hCT2300582.1 hCP1797942.1 hCG2039675;hCG2039987 mCG11517.3;rCG60049
100064 EREG 4q21.21 NM_001432 epiregulin epiregulin precursor NM_001432.1 hCG14966.2;hCG14966.2 12702554;9419975;9337852;9553109 O14944 GO:0000074:regulation of cell cycle;GO:0001525:angiogenesis;GO:0008283:cell proliferation;GO:0007173:epidermal growth factor receptor signaling pathway;GO:0007267:cell-cell signaling GO:0008083:growth factor activity;GO:0005154:epidermal growth factor receptor binding GO:0005615:extracellular space;GO:0005887:integral to plasma membrane NM_001432.1 115263 hCG14966.2 current NP_001423.1 2069 D30783.1 602061 TOMOREGULIN - RELATED TRANSMEMBRANE PROTEIN WITH EGF-LIKE AND TWO FOLLISTATIN-LIKE DOMAINS 1 Miscellaneous function -> Surfactant Biological process unclassified 4 hCT5987.3 hCP34956.1 hCG14966.2 mCG1712.1;rCG60401
100079 HSPD1 2q33.1 NM_199440 heat shock 60kDa protein 1 (chaperonin) chaperonin NM_199440.1 hCG2012240;hCG2012240 11932435;11898127;12218165;12461076;12515899;12406306;12869561;12686536;11862386;12890148;11689615;14500649;12483302;12965262;11803047;12215374;2568584;1980192;12477932;11860186;11337467;12594256 P10809 GO:0006457:protein folding;GO:0030150:mitochondrial matrix protein import GO:0005524:ATP binding;GO:0003773:heat shock protein activity GO:0005759:mitochondrial matrix NM_199440.1;NM_002156.4 79037 hCG2012240 current NP_955472.1;NP_002147.2 3329 BC003030.1;BC002676.2;BC067082.1;AJ250915.1_CDS_2;BC047350.1;M22382.1;M34664.1;BX647145.1 118190 HSP60 AND TCP-1 CHAPERONIN FAMILY MEMBER 60 KDA CHAPERONIN Chaperone -> Chaperonin Protein metabolism and modification -> Protein folding 2 hCT2302721;hCT2302720.1;hCT2302722.1 hCP1807915.1;hCP1807913.1;hCP1807916 hCG2012240 rCG22608;mCG117550.1
100089 C14orf114 14q24.1 NM_018199 chromosome 14 open reading frame 114 chromosome 14 open reading frame 114 NM_018199.1 hCG22245.3;hCG22245.3 12477932;14702039 Q9NVH0 GO:0008408:3'-5' exonuclease activity;GO:0003676:nucleic acid binding GO:0005622:intracellular NM_018199.1 65797 hCG22245.3 current NP_060669.1 55218 BX647767.1;BC001962.1;AK056025.1;AL834434.1;AX877083.1_CDS_1;AK001600.1;BX161412.1 FAMILY NOT NAMED SUBFAMILY NOT NAMED Molecular function unclassified Biological process unclassified 14 hCT13338.2;hCT1955812.1;hCT2329384 hCP1867009;hCP1765342.1;hCP39735.3 hCG22245.3 rCG20736.1;mCG7622.1
100093 GLI3 7p13 NM_000168 GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome) GLI-Kruppel family member GLI3 NM_000168.2 hCG17268.3;hCG17268.3 8378770;10441342;9402960;12575661;12575660;2850480;2118997;12545275;10077605;9054938 GO:0006355:regulation of transcription, DNA-dependent;GO:0007165:signal transduction;GO:0000060:protein-nucleus import, translocation;GO:0009653:morphogenesis;GO:0006366:transcription from Pol II promoter GO:0008270:zinc ion binding;GO:0003700:transcription factor activity GO:0005634:nucleus;GO:0005737:cytoplasm NM_000168.2 72916 hCG17268.3 current NP_000159.2 2737 M57609.1 165240 KRAB BOX ZINC FINGER TRANSCRIPTION FACTORS ZINC FINGER PROTEIN Transcription factor -> Zinc finger transcription factor -> KRAB box transcription factor Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation 7 hCT8318.3;hCT2299656;hCT2299658 hCP1856567;hCP1856568;hCP37583.3 hCG17268.3 rCG45306;mCG4329.1
100095 Celera: hCG1817887.1;hCG1817887.1 hCG1817887.1;hCG1817887.1 hCG1817887.1 current 10 hCT1960466.1 hCP1771884.1 hCG1817887.1

Total number of rows: 36179

Table truncated, full table size 18049 Kbytes.






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