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Status
Public on Aug 16, 2024
Title
Agilent-085738 50007725_LE 085737 Lithocarpus edulis
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Lithocarpus edulis Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Arrays of this design have barcodes that begin with 16085738 or 2585738.
Submission date
Aug 16, 2022
Last update date
Aug 16, 2024
Contact name
Akiko Satake
E-mail(s)
akiko.satake@kyudai.jp Organization name
Kyushu University
Street address
Motooka 744
City
Fukuoka
ZIP/Postal code
819-0395
Country
Japan
Samples (72)
GSM6468133 , GSM6468134 , GSM6468135 , GSM6468136 , GSM6468137 , GSM6468138
GSM6468139 ,
GSM6468140 ,
GSM6468141 ,
GSM6468142 ,
GSM6468143 ,
GSM6468144 ,
GSM6468145 ,
GSM6468146 ,
GSM6468147 ,
GSM6468148 ,
GSM6468149 ,
GSM6468150 ,
GSM6468151 ,
GSM6468152 ,
GSM6468153 ,
GSM6468154 ,
GSM6468155 ,
GSM6468156 ,
GSM6468157 ,
GSM6468158 ,
GSM6468159 ,
GSM6468160 ,
GSM6468161 ,
GSM6468162 ,
GSM6468163 ,
GSM6468164 ,
GSM6468165 ,
GSM6468166 ,
GSM6468167 ,
GSM6468168 ,
GSM6468169 ,
GSM6468170 ,
GSM6468171 ,
GSM6468172 ,
GSM6468173 ,
GSM6468174 ,
GSM6468175 ,
GSM6468176 ,
GSM6468177 ,
GSM6468178 ,
GSM6468179 ,
GSM6468180 ,
GSM6468181 ,
GSM6468182 ,
GSM6468183 ,
GSM6468184 ,
GSM6468185 ,
GSM6468186 ,
GSM6468187 ,
GSM6468188 ,
GSM6468189 ,
GSM6468190 ,
GSM6468191 ,
GSM6468192 ,
GSM6468193 ,
GSM6468194 ,
GSM6468195 ,
GSM6468196 ,
GSM6468197 ,
GSM6468198 ,
GSM6468199 ,
GSM6468200 ,
GSM6468201 ,
GSM6468202 ,
GSM6468203 ,
GSM6468204 Series (2)
GSE211382 Lithocarpus edulis transcriptome project
GSE211385 Fagaceae transcriptome project
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
Data table ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE 1
192
328
GE_BrightCorner
GE_BrightCorner
pos
2
192
326
DarkCorner
DarkCorner
pos
3
192
324
DarkCorner
DarkCorner
pos
4
192
322
matebashii21041
matebashii21041
FALSE
TIM10
AT2G29530.1
TRINITY_DN229787_c0_g1_i1|ens|AT2G29530.1
unmapped
Tim10/DDP family zinc finger protein [Source:UniProtKB/TrEMBL;Acc:F4IKQ3]
TCAAAAACCTCAAATCTCTTCGGAGCAAAAGATTGCGCAGGCGGAAGCTGAGATTGACAT
5
192
320
matebashii12348
matebashii12348
FALSE
CAT3
AT1G20620.6
TRINITY_DN118316_c3_g1_i1|ens|AT1G20620.6
unmapped
catalase 3 [Source:TAIR;Acc:AT1G20620]
TTACTCGCAGAAGGACCTGTACGATGCTATTGAGCGCAAGGACTACCCTGGCTGGGACGT
6
192
318
matebashii36475
matebashii36475
FALSE
AT1G63400.1
TRINITY_DN118161_c2_g6_i7_rc|ens|AT1G63400.1
unmapped
Pentatricopeptide repeat-containing protein At1g63400 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH26]
CTCTCCTAATGATTATACTCTTACTATTTTGATTAACTGCTTCTGCCTTTTGAACCGAGC
7
192
316
matebashii25947
matebashii25947
FALSE
TRAF1B
AT1G04300.3
TRINITY_DN98050_c0_g1_i1_rc|ens|AT1G04300.3
unmapped
TNF receptor-associated factor homolog 1b [Source:UniProtKB/Swiss-Prot;Acc:A8MQL1]
ACCTTCTGAGTTGTATGGAAAATATACGTGGAGGGTGGAGAAATTTTCAGAGTTAAAAAA
8
192
314
matebashii31627
matebashii31627
FALSE
TRINITY_DN116889_c0_g1_i1_rc
unmapped
.
AAGCCACTGTCACTACGAATTTTTTATACCGTGTAACGACAACACGAATGAACATATTTT
9
192
312
matebashii12068
matebashii12068
FALSE
SK1
AT2G21940.3
TRINITY_DN122258_c0_g1_i1|ens|AT2G21940.3
unmapped
Shikimate kinase 1 [Source:UniProtKB/TrEMBL;Acc:F4IIJ2]
GAACTCGAGAAGGCAGAGGGTATGAGCATACCTGAAATGCTCAAAGACAACGACTGGGAT
10
192
310
matebashii18660
matebashii18660
FALSE
RPS6B
AT5G10360.1
TRINITY_DN119288_c1_g3_i3|ens|AT5G10360.1
unmapped
40S ribosomal protein S6 [Source:UniProtKB/TrEMBL;Acc:A0A178USM6]
CAAAAGACGTCAAGTCTAGCCATGTCAAGGTTAAGAGTCATGTCCACTGCAATTCGGCTT
11
192
308
matebashii22579
matebashii22579
FALSE
AT2G30780.1
TRINITY_DN60282_c0_g1_i1_rc|ens|AT2G30780.1
unmapped
Pentatricopeptide repeat-containing protein At2g30780 [Source:UniProtKB/Swiss-Prot;Acc:O49343]
AGCAAGACCAATATTTGGAAGATAGGATTTAGCCTCTCAATCAATGGCCTTTAACCTCAA
12
192
306
matebashii22911
matebashii22911
FALSE
VIP5
AT1G61040.1
TRINITY_DN26157_c0_g1_i1_rc|ens|AT1G61040.1
unmapped
VIP5 [Source:UniProtKB/TrEMBL;Acc:A0A178WDP6]
CACAGTAGCTGAGATTATTAAGATTGATATTAAGTTCCCTAAGAACATGTCATCACCGAT
13
192
304
matebashii35858
matebashii35858
FALSE
LIP1
AT5G64813.1
TRINITY_DN117478_c0_g6_i1_rc|ens|AT5G64813.1
unmapped
Small GTPase LIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J9]
GCTTCTGGTATCAATTGACCTTTTATGGTCATAAAGCTGAAACCTACAATATAGCAAACT
14
192
302
matebashii15870
matebashii15870
FALSE
ATL39
AT4G09100.1
TRINITY_DN155402_c0_g1_i1|ens|AT4G09100.1
unmapped
RING-H2 finger protein ATL39 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0R7]
ATTTGCTTGGATGAGTTTACTGAATCCGAACACCCAGTACGCGAATTACCTTGCAGGCAT
15
192
300
matebashii07856
matebashii07856
FALSE
AT3G06390.1
TRINITY_DN135805_c0_g1_i1|ens|AT3G06390.1
unmapped
CASP-like protein 1D2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU2]
CTAGCCTCTACGAGTCCAAAAATTCCATAAATATATATTATGCGAATTATGGCCACAAAC
16
192
298
matebashii04301
matebashii04301
FALSE
AT3G23325.1
TRINITY_DN53375_c0_g2_i1|ens|AT3G23325.1|ens|AT4G14342.1
unmapped
Uncharacterized protein At3g23325 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW64];;Splicing factor 3B subunit 5/RDS3 complex subunit 10 [Source:TAIR;Acc:AT4G14342]
TCGTCTAGCTTGTGTGTCTGGGCATGTAAGTTATATAACCCTTTACTATAATTGTGAAGC
17
192
296
matebashii39671
matebashii39671
FALSE
AT5G59460.1
TRINITY_DN114718_c0_g1_i1_rc|ens|AT5G59460.1
unmapped
At5g59460 [Source:UniProtKB/TrEMBL;Acc:Q9LTI4]
CCACCAATGGCTACTGTCAACTTTTCAAATCTAGATGAACTGTACTATTTTGTTCCATTA
18
192
294
matebashii24744
matebashii24744
FALSE
AT1G01800.1
TRINITY_DN97113_c0_g1_i1_rc|ens|AT1G01800.1
unmapped
AT1G01800 protein [Source:UniProtKB/TrEMBL;Acc:Q94K30]
TTGAATCTGTTGGTCAATAATGCGGGAATTGCACTCGAGGGATTCGATGCAAAGATGACC
19
192
292
matebashii08086
matebashii08086
FALSE
AT2G26695.1
TRINITY_DN103993_c0_g1_i1|ens|AT2G26695.1
unmapped
At2g26695 [Source:UniProtKB/TrEMBL;Acc:Q6ID73]
AGGCTCTTTTCAGACCACAATAACCATGCGCTTGTATTAGAAGGGTTTCTAGCTTTATAT
20
192
290
matebashii24102
matebashii24102
FALSE
LAC14
AT5G09360.1
TRINITY_DN25798_c0_g1_i1_rc|ens|AT5G09360.1
unmapped
Laccase-14 [Source:UniProtKB/Swiss-Prot;Acc:Q9FY79]
GTACTTCTAGAAAAATATTGGGAAACCCTGTACGATTGTACGAAAATCTGTCTTCTTGAT
62976 15303 Kbytes .Supplementary file Size Download File type/resource GPL32572_Arraydesign_L.edulis.txt.gz
4.1 Mb
(ftp) (http) TXT
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