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Platform GPL3108 Query DataSets for GPL3108
Status Public on Nov 22, 2005
Title Duke University Microarray Facility Operon Mouse Oligo set, version 2.0
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Mus musculus
Manufacturer Duke University Microarray Facility
Manufacture protocol The Operon mouse oligonucleotide library,version 2.0, comprised of 70-mer oligonucleotides representing 16,443 unique mouse genes, was printed on poly-L-lysine-coated glass slides. The library also included sets of positive and negative controls that were used for quality control purposes. Oligonucleotides were spotted using a GeneMachines Omnigrid arrayer by the Duke University Microarray facility. Details can be found at http://mgm.duke.edu/genome/dna_micro/core/spotted.htm.
Coating polysine
 
 
Web link http://mgm.duke.edu/genome/dna_micro/index.htm
Contributor(s) Coveney D, Ross AJ, Capel B
Submission date Nov 20, 2005
Last update date Jan 17, 2013
Contact name Douglas Coveney
Organization name Duke University Medical Center
Department Cell Biology
Street address Research Drive
City Durham
State/province NC
ZIP/Postal code 27710
Country USA
 
Samples (16) GSM84973, GSM84974, GSM84975, GSM84976, GSM754240, GSM754241 
Series (2)
GSE3650 Expression analyses to identify genes involved in testis-specific vascular development
GSE30393 Genomic characterization of osteoblastic differentiation of MC-3T3E1 cells

Data table header descriptions
ID
Block print tip group, 24 rows by 24 columns
Column within grid, columns (1-24)
Row within grid, rows (1-24)
Operon ID ID for individual oligos in Operon set. Can be used to search Operon database at www.operon.com/arrays/omad.php?
SEQUENCE oligonucleotide sequence
Reporter Usage Description of spot - Experimental, Randomized negative control, empty or blank
GB_ACC Genbank Accession ID
Unigene ID Unigene ID
Symbol Official gene symbol (NCBI)
Description Gene description (NCBI)
SPOT_ID

Data table
ID Block Column Row Operon ID SEQUENCE Reporter Usage GB_ACC Unigene ID Symbol Description SPOT_ID
1 1 1 1 M200000112 AAAGGAGGGTAGCTGTGGGAAAAGGGTAACTTATTGGGGACAAGCATGCAGTGGGGGGCTAGAGGAGCT Experimental NM_024256 259 B3Gat3 Beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)
2 1 1 2 M200000491 AATGTACCCAGGCGACTATGCGACACCTGAGCAGATGGCACAATATGAAACTCAGCTCCGCAGATACAT Experimental NM_008918 1269 Ppy Pancreatic polypeptide
3 1 1 3 M200000885 TGGGATGCATAATCGCTGCTGGTTGAATACAGAGACGGGGTTTATCTGGAGTTTCCTGGGGCCTGTCTG Experimental X93328 2254 Emr1 EGF-like module containing, mucin-like, hormone receptor-like sequence 1
4 1 1 4 M200001263 CTACTCGCCCATTTACCTGTCATTTATCATGCTCTTGGCTGCCCTGAGCTGGCAGTACCTGAGCACCCT Experimental NM_010191 3204 Fdft1 Farnesyl diphosphate farnesyl transferase 1
5 1 1 5 M200001656 ACACTATGAAATTATAAGAATGCCTATAGACCACCCGCATCTCAAAAGTGGTTGGCCCCATGCGGGACA Experimental NM_008349 4154 Il10rb Interleukin 10 receptor, beta
6 1 1 6 M200002051 AAGCTGCCAAAGTCTTTTCATCAGATGGGAAAACTGACCTAACAAGCAGCTTTGATACTAAATTCGATG Experimental U06662 4849 Ofa Oncofetal antigen, 59 kDa
7 1 1 7 M200002448 CTCTGTGACTTGCCCTGCATCACTGAGGAGCAAACGAGAGGCCAACAAAGAAGACACAATGACGGTTAG Experimental NM_011775 6510 Zp2 Zona pellucida glycoprotein 2
8 1 1 8 M200002826 CTGCCATCCTCAGCAGAGACGTGACAGACGGGTTGCCTCATGAAAAAGTGATCAGTGAAGGGAGAGCTC Experimental NM_008395 8975 Itch Itchy
9 1 1 9 M200003204 TCCAATATCTCGAGTTTGCGGATATGACACCCCGTTTCCTCACATCTTTGAGCCCTTTTATATCCCAGA Experimental L16992 12819 Bckdhb Branched chain ketoacid dehydrogenase E1, beta polypeptide
10 1 1 10 M200003607 AGGCCATCTGTGAGATTTGAATACAAAGTGCCTCTTTGAGTCTCCTACCCGTTCTGGGATCCCATTTCT Experimental NM_019492 17554 C2pa-pending C2 membrane binding, PDZ protein/protein interaction, ATP/GTP binding domains
11 1 1 11 M200003986 GCAGGCAGCCAGGCTGGCAGACTGCTGTATAGCATCCCACTCTCTGGCTGTAATATAACGATGCCTGAC Experimental NM_015759 20436 Fgd3 Faciogenital dysplasia homolog 3
12 1 1 12 M200004366 GGCCTGTCTAGGGCTCCTTGTCCTCCACGACAGCGATCGGAAAACAGGCACCAGGAATATGTTTAGCAT Experimental BC009140 22040 AW556797 Expressed sequence AW556797
13 1 1 13 M200004761 AATGAAATGACTACTGTCCCCGTGACCTAACGGTAACTGTGATGCACTACTAGACTCATACGCTGAGGC Experimental AK014586 23630 4632417N05Rik RIKEN cDNA 4632417N05 gene
14 1 1 14 M200005145 TTGCCAGCAGCACCAACTTCCCTGTTGTGTGGCACAAGACGGTAAGAGGGAGACCAAAGTTATCAAGGA Experimental NM_033398 24997 Ptdsr Phosphatidylserine receptor
15 1 1 15 M200005523 ATCTGGGAAAACTACATTCTCACCAGCACCGATTTCGGGGAGTTTGGGGAAGCCATCAAAGCTTACCAC Experimental AK012131 27095 2610511O17Rik RIKEN cDNA 2610511O17 gene
16 1 1 16 M200005902 TAAGATTGTCATTCACTTGATGAACATTGGGATGGGCCGGGGGGGAGGGGGGTGTTGTACTGGACCTTG Experimental NM_030082 28022 1500011O09Rik RIKEN cDNA 1500011O09 gene
17 1 1 17 M200006284 ACTAGACACCCGACCCTTACTAGCCACCAGCCTTAATTAAACACGGCCTTGGCCTAAGGCCTGGCTGGC Experimental NM_019705 28806 Ubce7ip3-pending Ubiquitin conjugating enzyme 7 interacting protein 3
18 1 1 18 M200006682 CGCACGTCAGTGGATTTCAAAGACACTGACTATAAGCGACACCAGCTTACAAGGTCCATTAGTGAGATC Experimental AK008045 29601 2010002I23Rik RIKEN cDNA 2010002I23 gene
19 1 1 19 M200007080 CCGTCTTGGCTGTCTAGTGCGTGCTATCTGTGTGGGGAGAAGCTTCGTGAATATGCACCGTTTTGATGC Experimental NM_010096 30282 Ebf3 Early B-cell factor 3
20 1 1 20 M200007463 GGAAAAGCTACCAACGTGGGTGTGGTGAGATTAGGGAATTTCCACCTGCGTCCACTGCGATTCAAGGTC Experimental BC013508 33087 9130017N09Rik RIKEN cDNA 9130017N09 gene

Total number of rows: 17664

Table truncated, full table size 2763 Kbytes.






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