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Platform GPL2891 Query DataSets for GPL2891
Status Public on Sep 29, 2005
Title GE Healthcare/Amersham Biosciences CodeLink™ UniSet Human 20K I Bioarray
Technology type spotted oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer GE Healthcare
Manufacture protocol http://www4.amershambiosciences.com/aptrix/upp01077.nsf/Content/codelink_user_protocols
Catalog number 300019
Support glass
Coating other
 
Description CodeLink UniSet Human Bioarray content was based on the public UniGene and RefSeq databases, and sequences for design were derived from Incyte LifeSeq™ Gold and Foundation databases. Well-annotated mRNA or coding sequences were chosen to ensure usefulness for a large range of applications in basic research, biotechnology, and drug development. Each sequence was carefully screened to ensure high quality, specific probe design, and to reduce redundancy of gene targets. Every probe was functionally validated against multiple tissues to ensure best representation of the gene so that the results will be biologically relevant. Every bioarray is also functionally validated during production to further ensure quality performance.

CodeLink users can submit data to GEO by exporting tab-delimited text files from the CodeLink software. The "Feature_id" header will need to be renamed to "ID_REF", and the "Normalized_intensity" header to "VALUE" before uploading the exported tables.

In addition, users are encouraged to include additional raw data columns in their data uploads. These additional columns do not need to be renamed.

 
Web link http://www4.amershambiosciences.com/aptrix/upp01077.nsf/Content/codelink_human_bioarrays#20K
Submission date Sep 26, 2005
Last update date Sep 27, 2013
Contact name Randall Lockner
E-mail(s) randall.lockner@ge.com
Phone 480-722-2311
Fax 480-722-2334
URL http://www.codelinkbioarrays.com
Organization name GE Healthcare Life Sciences
Department Bioinformatics
Street address 7700 S River Parkway
City Tempe
State/province AZ
ZIP/Postal code 85284
Country USA
 
Samples (272) GSM100940, GSM102250, GSM102251, GSM102252, GSM102253, GSM102254 
Series (12)
GSE4609 Transcriptome analysis of Stem Cells from Human Umbilical Cord Blood
GSE4676 Gene expression profiles of oral tongue squamous cell carcinoma tissues.
GSE4797 Microarray analysis of human spermatogenic dysfunction

Data table header descriptions
ID Feature_id in CodeLink data export
LOGICAL_ROW The logical row position of the spot.
LOGICAL_COL The logical column position of the spot.
PROBE_NAME The unique probe identifier. Each Probe Name is specific for a given oligonucleotide probe and is the primary identifier.
PROBE_TYPE A classifier indicating the functional role of the oligonucleotide probe.
PUB_PROBE_TARGETS A classifier describing the oligonucleotide probe to target relationship. SINGLE - the oligo uniquely targets a single transcript in the public domain. MULTIPLE - the oligo targets more than one transcript in the public domain. DUPLICATE - more than one oligo exists on the bioarray that target the same transcript.
SPOT_ID An identifier for oligonucleotide probes that do not have a corresponding public reference.
GB_ACC The NCBI GenBank accession number assigned to the target sequence.
GI The NCBI GI number assigned to the target sequence.
GB_LIST A comma delimited list of NCBI GenBank accession numbers for probes having more than one target transcript.
GI_LIST A comma delimited list of NCBI GI numbers for probes having more than one target transcript.

Data table
ID LOGICAL_ROW LOGICAL_COL PROBE_NAME PROBE_TYPE PUB_PROBE_TARGETS SPOT_ID GB_ACC GI GB_LIST GI_LIST
101 1 1 GE199999 BLANK BLANK -- BLANK
102 1 2 GE199999 BLANK BLANK -- BLANK
103 1 3 GE199999 BLANK BLANK -- BLANK
104 1 4 GE199999 BLANK BLANK -- BLANK
105 1 5 GE199999 BLANK BLANK -- BLANK
106 1 6 GE199999 BLANK BLANK -- BLANK
107 1 7 GE199999 BLANK BLANK -- BLANK
108 1 8 GE199999 BLANK BLANK -- BLANK
109 1 9 GE53815 DISCOVERY SINGLE NM_012429.1 7110714 NM_012429.1 7110714
110 1 10 GE59986 DISCOVERY SINGLE NM_003980.3 45594308 NM_003980.3 45594308
111 1 11 GE53908 DISCOVERY SINGLE NM_020778.1 24308216 NM_020778.1 24308216
112 1 12 GE60064 DISCOVERY SINGLE NM_005015.1 4826879 NM_005015.1 4826879
113 1 13 GE53952 DISCOVERY SINGLE NM_019015.1 48717494 NM_019015.1 48717494
114 1 14 GE60188 DISCOVERY MULTIPLE NM_032986.2 16905503 NM_032986.2, NM_006363.3, NM_032985.2 16905503, 16905504, 16905502
115 1 15 GE199999 BLANK BLANK -- BLANK
116 1 16 GE53801 DISCOVERY SINGLE AB032981.1 6330115 AB032981.1 6330115
117 1 17 GE59978 DISCOVERY SINGLE NM_001907.1 4503136 NM_001907.1 4503136
118 1 18 GE53905 DISCOVERY SINGLE AB037745.1 7243028 AB037745.1 7243028
119 1 19 GE60052 DISCOVERY SINGLE NM_007039.2 18375656 NM_007039.2 18375656
120 1 20 GE53950 DISCOVERY SINGLE AB037820.1 7243178 AB037820.1 7243178

Total number of rows: 23572

Table truncated, full table size 1834 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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