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Status
Public on May 14, 2019
Title
Operon Arabidopsis Version 3.0 microarray
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Arabidopsis thaliana
Manufacturer
The David Galbraith lab, University of Arizona
Manufacture protocol
26,173 probes spotted with synthetic 70-mer oligonucleotides on aminosilane-coated slides
Submission date
Apr 08, 2019
Last update date
Apr 08, 2019
Contact name
JiHye Hwang
E-mail(s)
hwangjh0012@naver.com
Organization name
Ewha Womans University
Street address
52, Ewhayeodae-gil
City
Seoul
ZIP/Postal code
03760
Country
South Korea
Samples (23)
GSM3713342 , GSM3713343 , GSM3713344 , GSM3713345 , GSM3713346 , GSM3713347
GSM3713348 ,
GSM3713349 ,
GSM3713350 ,
GSM3713351 ,
GSM3713352 ,
GSM3713353 ,
GSM3713354 ,
GSM3713355 ,
GSM3713356 ,
GSM3713357 ,
GSM3713358 ,
GSM3713359 ,
GSM3713360 ,
GSM3713361 ,
GSM3713362 ,
GSM3713363 ,
GSM3713364
Series (1)
GSE129468
Low-oxygen stress responses of Brassicaceae Species
Data table header descriptions
ID
ORF
description
SPOT_ID
Data table
ID
ORF
description
SPOT_ID
3xSSC
Control
Alien1
Control: Stratagene Spotreport Alien Oligo
Alien10
Control: Stratagene Spotreport Alien Oligo
Alien2
Control: Stratagene Spotreport Alien Oligo
Alien3
Control: Stratagene Spotreport Alien Oligo
Alien4
Control: Stratagene Spotreport Alien Oligo
Alien5
Control: Stratagene Spotreport Alien Oligo
Alien6
Control: Stratagene Spotreport Alien Oligo
Alien7
Control: Stratagene Spotreport Alien Oligo
Alien8
Control: Stratagene Spotreport Alien Oligo
Alien9
Control: Stratagene Spotreport Alien Oligo
At1g01010
At1g01010
no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to NAC domain protein NAM GB: AAD17313 GI:4325282 from [Arabidopsis thaliana]
At1g01020
At1g01020
transmembrane ARV1-like family protein contains similarity to ARV1 [Homo sapiens] gi|12044055|gb|AAG47671
At1g01030
At1g01030
"DNA-binding protein, putative similar to DNA-binding proteins from [Arabidopsis thaliana] RAV1 GI:3868857, RAV2 GI:3868859; contains Pfam profile PF02362: B3 DNA binding domain"
At1g01040
At1g01040
DEAD/DEAH box helicase carpel factory / CAF identical to RNA helicase/RNAseIII CAF protein GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
At1g01050
At1g01050
"inorganic pyrophosphatase, putative [soluble] / pyrophosphate phospho-hydrolase, putative / PPase, putative strong similarity to SP|Q43187 Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase) {Solanum tuberosum}; contains Pfam profile PF00719: inorganic pyrophosphatase"
At1g01060
At1g01060
myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain; identical to cDNA LATE ELONGATED HYPOCOTYL MYB transcription factor GI:3281845
At1g01070
At1g01070
nodulin MtN21 family protein similar to MtN21 GI:2598575 (root nodule development) from [Medicago truncatula]
At1g01080
At1g01080
"33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to 33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana sylvestris]"
At1g01090
At1g01090
"pyruvate dehydrogenase E1 component alpha subunit, chloroplast identical to pyruvate dehydrogenase E1 alpha subunit GB:AAB86803 GI:2454182 from [Arabidopsis thaliana]; identical to cDNA pyruvate dehydrogenase E1 alpha subunit mRNA, nuclear gene encoding plastid protein GI:2454181"
Total number of rows: 26284 Table truncated, full table size 3637 Kbytes .
Supplementary data files not provided