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Platform GPL2623 Query DataSets for GPL2623
Status Public on Aug 01, 2005
Title Qiagen/Operon version 2.0 mouse oligonucleotide
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Mus musculus
Manufacturer -
Manufacture protocol The Qiagen/Operon version 2.0 mouse oligonucleotide library, comprised of oligonucleotides (70-mers) representing 16,443 unique mouse genes, was printed on poly-L-lysine-coated glass slides. The library also included sets of positive and negative controls that were used for quality control purposes. Oligonucleotides were prepared in sets of 384-well plates at a concentration of 40 <E6>M. Arrays were prepared using a custom-built array printer equipped with Majer MicroQuill-2000 split tip pins with a capacity of 255 slides per print run. The printed arrays were numbered sequentially during each run and tracked by a unique identification number. After completion of printing and air drying of the arrays, all slides were washed in 0.2% SDS to remove excess oligonucleotide followed by a brief rinse in 70% ethanol. Slides selected from throughout the run were tested for correct printing by nonspecific hybridization of Cy3-labeled, random 9-mers.
Support glass
Coating polysine
 
 
Citation(s) 16216878
Submission date Jul 12, 2005
Last update date Mar 24, 2006
Contact name Ting Ting Zhang
E-mail(s) tizst0@yahoo.com
Phone 617-855-2179
Fax 617-855-2179
Organization name Harvard University
Department Mclean Hospital
Lab bioorgnic and natural product
Street address 115 Millman st
City Belmont
State/province MA
ZIP/Postal code 02478
Country USA
 
Samples (8) GSM64041, GSM64042, GSM64043, GSM64044, GSM64045, GSM64046 
Series (1)
GSE2933 Aldosterone-responsive genes in kidney cortical collecting duct cell line, mpkCCDc14

Data table header descriptions
ID
GB_ACC GenBank Accession number
Unigene
Description
UG_Symbol
Chromosome_Loc
Protein_Acc
mRNA_Acc
BGCell
GO_cellular_component
SEQUENCE

Data table
ID GB_ACC Unigene Description UG_Symbol Chromosome_Loc Protein_Acc mRNA_Acc BGCell GO_cellular_component SEQUENCE
M200000001 NM_008263 Mm.5 Homeo box A10 Hoxa10 NP_032289 BC050839 nucleus; transcription factor complex TGGAAGCCTAGGTGGGCTGGGGCAAGCAGAAATAAAAATGAGAGAAGGGAGATATTGTTTGGATTTCCT
M200000002 NM_011701 Mm.268000 Vimentin Vim NP_035831 AK033175 intermediate filament; type III intermediate filament GCAGGATTTCTCTGCCTCTGCCAACCTTTTCTTCCCTGAACCTGAGAGAAACTAACCTGGAGTCACTTC
M200000003 NM_009480 Mm.8 Upstream transcription factor 1 Usf1 NP_033506 BC049784 nucleus; transcription factor complex CTCTGGAGCAGAAGTTAAGATGCATACCTGAGTACTCTGGGAAGCAGGCTTACTCAAGAGGTGGGAAAG
M200000004 NM_009272 Mm.10 Spermidine synthase Srm 4 NP_033298 NM_009272 GACCAAGGATCTTCCAAGTTGTCTGGGGACCACCAGTCCTGGACCAGACTCCCAGATGACTCTTGCCCA
M200000005 NM_008657 Mm.11 Myogenic factor 6 Myf6 NP_032683 AK029370 nucleus GCCCCCAGTGGCCAAGTGTTTCGGATCATTCCAGGGGCCTCGTGATAACTGCTAAGGAAGGAGGAGCAA
M200000006 NM_012060 Mm.17 B-cell receptor-associated protein 31 Bcap31 X NP_036190 BE949807 Golgi membrane; endoplasmic reticulum; integral to membrane; integral to plasma membrane; plasma membrane CTGGTGACCTGGCCTGCAGTTTGAACCCCTTTTTATTTTGCAATGTACCCTAAAGGAGGCTGCTGTGAA
M200000007 NM_017461 Mm.18 Septin 1 Sept1 7 NP_059489 M37030 AGAAAGTCAATATCATCCCGGTCATCGGTAAAGCAGACGCCCTGATGCCTAGGGAGACTCAGGCCCTCA
M200000008 AK005451 Mm.22 RIKEN cDNA 1600014E20 gene 1600014E20Rik 2 NP_082321 AK005451 GTATATGAGCAAACTCGCTCAGACTGTAAGGACCCAAATTATGGAGGATGTCCACACTGGGGCTGCAAA
M200000009 NM_010448 Mm.280842 Heterogeneous nuclear ribonucleoprotein A/B Hnrpab 11 NP_034578 NM_010448 BGB002 Ex166 RRS341 nucleus; ribonucleoprotein complex; viral nucleocapsid GCCGAGTGACGACCGCACACGCTTTGTTTGGACGCGGAGTGAACACAATTATGTACCAAATTTAACTTG
M200000010 AK014509 Mm.25 --- cytoskeleton CCTGTGCAGCCCCTTAGGAATAGCAGGTACCTTTTACACACAGAGAAGCTGTGTTTAGGATGATCACTT
M200000011 NM_009745 Mm.31 B-cell CLL/lymphoma 7B Bcl7b 5 NP_033875 BC011471 RRJ098 cellular_component unknown ATGGAGGGCGTGGGGTCGTCGCACCATCTTCTTGTTCCTGACACTTGTGTCTGCTTGCTCTTGAGCAAA
M200000012 NM_011991 Mm.40 COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana) Cops3 11 NP_036121 BC068179 XG126 signalosome complex AGCCTCTCAGCAATGCTTACCATGAGTTAGCACAAGTTTATTCAACCAACAACCCGTCTGAGCTGCGGA
M200000013 AK005309 Mm.41 ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit Atp5o NP_613063 CA461898 RRS675 mitochondrion; mitochondrion; proton-transporting two-sector ATPase complex GCGGAGAAGTGCCATGCACAGTGACCACAGCATCTCCTCTAGATGACGCTGTTCTCTCTGAGTTAAAGA
M200000014 NM_010858 Mm.247636 Myosin, light polypeptide 4 Myl4 NP_034988 AK084544 RRN210 RRO547 XD024 XM244 cytoskeleton; myosin AGCCCCTCAAGGACTCTGCCTTTGACCCAAAGAGTGTGAAGATAGACTTCAGTGCTGACCAGATCGAAG
M200000015 BC005662 Mm.284649 CDNA sequence BC005662 BC005662 13 NP_663351 AK081865 CTACGCAGAGGACTACTTGTACCCTGATCAGACACATTTTGACAGCTGTGCACAGACACCCCCAGCACC
M200000016 AK019025 Mm.52 DNA segment, Chr 11, ERATO Doi 99, expressed D11Ertd99e NP_080894 CA450971 integral to membrane; mitochondrion CCTAACTGTATGGACCATCTTCAAACTGCTGGATCCCCTGTATATGTTGAATGATGCCTGGTGGTCTTA
M200000017 NM_009054 Mm.314056 Tripartite motif protein 27 Trim27 NP_033080 BC069924 cytoplasm; intracellular; nucleus; ubiquitin ligase complex ATGCCATACCTTTACTTTCTCTCACGCTACCTTCTGTGGGCCAGTCCGGCCCTACTTCAGCCTAAGCTA
M200000018 AF263240 Mm.265744 Down syndrome critical region homolog 1 (human) Dscr1 NP_062339 AY325904 RRO357 RRS552 cytoplasm; nucleus GAAAGTTCTGGAACACTCTTACCACGTGTCCTCGTTTTTCTCTGCACATGGGGTCGAGGCTGGAGACAT
M200000019 NM_013455 Mm.57 Preproacrosin Acr NP_038483 AK006695 extracellular space AACGTAGTGACGGAGGGAAATGACATTGCGCTCTTGAAGATCACTCCTCCTGTTACATGTGGGAACTTC
M200000020 NM_013566 Mm.58 integrin beta 7 Itgb7 15 NP_038594 AK078871 extracellular space; integral to membrane; integrin complex TGACCTTGGCCCCTAACTTGGATGATGGCTGGTGCAAAGAAAGGACAATAGACAACCAGCTGTTCTTCT

Total number of rows: 16463

Table truncated, full table size 2985 Kbytes.






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