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Platform GPL26142 Query DataSets for GPL26142
Status Public on Feb 20, 2019
Title Agilent-028416 GEVitisVinifera
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Vitis vinifera
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16028416 or 2528416.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Feb 04, 2019
Last update date Oct 29, 2021
Contact name Maria Francesca Cardone
E-mail(s) mariafrancesca.cardone@crea.gov.it
Organization name Consiglio per la ricerca in agricoltura e l’analisi dell’economia agraria (CREA)
Department Centro di ricerca Viticoltura ed Enologia (CREA-VE)
Street address via Casamassima 148
City Turi
State/province Bari
ZIP/Postal code 70010
Country Italy
 
Samples (16) GSM3589776, GSM3589777, GSM3589778, GSM3589779, GSM3589780, GSM3589781 
Series (1)
GSE126052 Effect of different irrigation supply on gene expression of two table grape cultivars
Relations
Alternative to GPL30912 (Probe name version)

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
1 266 170 GE_BrightCorner GE_BrightCorner pos
2 266 168 DarkCorner DarkCorner pos
3 266 166 DarkCorner DarkCorner pos
4 266 164 DarkCorner DarkCorner pos
5 266 162 DarkCorner DarkCorner pos
6 266 160 DarkCorner DarkCorner pos
7 266 158 DarkCorner DarkCorner pos
8 266 156 DarkCorner DarkCorner pos
9 266 154 DarkCorner DarkCorner pos
10 266 152 DarkCorner DarkCorner pos
11 266 150 DarkCorner DarkCorner pos
12 266 148 CUST_8327_PI425248304 CUST_8327_PI425248304 FALSE GSVIVT01025673001 unmapped ATCCACCACAAACAGGTTCTCCACACCATGAAACTGAAATGGGAAATTCTGGGAATCCAC
13 266 146 CUST_6750_PI425248304 CUST_6750_PI425248304 FALSE GSVIVT01021948001 unmapped CCTAAGATAGAGAAGTTGATACTCTATGATGTGCCCAATATACCTTTCAAGATGAATATC
14 266 144 CUST_3206_PI425248304 CUST_3206_PI425248304 FALSE GSVIVT01010777001 unmapped TGAAAAAAGCTTCACCAAAAGCAGAGCATCCTGGGCCATTTCCTCATATAAGGCGAATCC
15 266 142 CUST_8945_PI425248043 CUST_8945_PI425248043 FALSE GSVIVT01037914001 unmapped AATGCCTGCAATCAGTCCTCCAGGGATCTGGAAATTAAATCCTGCAATACCAATTTATGA
16 266 140 CUST_4370_PI425248304 CUST_4370_PI425248304 FALSE GSVIVT01014730001 unmapped GATTCCTGCTCCAGGCCATGATATATCCAGCTTGCAGTCCAATTCTTTGTTCAACCTTTC
17 266 138 CUST_3199_PI425248304 CUST_3199_PI425248304 FALSE GSVIVT01010760001 unmapped CTCCATTGTTTCACTTCTGGGATGCTGTTTATGGTTACTACATTCATTGGGGAATATTAA
18 266 136 CUST_3450_PI425248304 CUST_3450_PI425248304 FALSE GSVIVT01011378001 unmapped GATATTCGGTTTGTGCCTTGTGAGACATGTTCAGGGAGCTGTAAAATCTACTACGAAGGC
19 266 134 CUST_4221_PI425248304 CUST_4221_PI425248304 FALSE GSVIVT01014381001 unmapped ACTGAAATTTTTGTTCAAGAAGCAACTGATGATGCAGGCCGCGTCTCGGAAAGTAGGTGA
20 266 132 CUST_2183_PI425248063 CUST_2183_PI425248063 FALSE GSVIVT01020168001 unmapped TACTTATGAGCAATCAGCAGTTAGCACCTTCACTGATCCCCAATGTATGGGAGGAAACTG

Total number of rows: 45220

Table truncated, full table size 6499 Kbytes.




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Supplementary data files not provided
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