As descripted by Agilent manuals under Platform_web_link
Support
glass
Coating
aminosilane
Description
The Agilent's Mouse Development Oligo Microarray 44K is formatted on a 1x3 inch (25mm x 75mm) glass slide. Each 44,290-feature microarray contains 42,291 (60-mer) probes representing all empirical and predicted mouse genes and transcripts from the NIA Mouse Gene Index. The sequence and associated annotation information is based on the NIA Mouse Gene Index 4.0 http://lgsun.grc.nia.nih.gov/geneindex4, which combines genome assembly sequences from public databases (RefSeq, Ensembl, Riken), and the NIA collection of public EST libraries derived from stem cells and early stage of mouse embryos, along with human-curated genetic databases to form structure models of over 40,000 genetic loci4. Furthermore, a set of synthetic spike-in control probes are included to control variations in target labeling and hybridization, and to provide more quantitative information on transcripts5.
Ectodysplasin regulates the lymphotoxin-beta pathway for hair differentiation
Data table header descriptions
ID
Feature Number
OLIGO_NAME
NIA Universal Oligo Name
Row
Feature location row
Col
Feature location column
Start
Start position of the probe sequence
ProbeUID
Unique integer for each unique probe in a design
ControlType
Feature control type 0=Control type none 1=Positive control -1=Negative control -1000=Deletion control -2000=Not probe
ProbeName
An Agilent-assigned identifier for the probe synthesized on the microarray
GeneName
This is an identifier for the gene for which the probe provides expression information. The target sequence identified by the systematic name is normally a representative or consensus sequence for the gene
OLIGO_NAME
GB_LIST
GenBank accession list ,
SPOT_ID
SP_LIST
SwissProt accession list
SEQUENCE
Sequence of oligonucleotide probe
GENE
Entrez GENE ID
GENE_SYMBOL
Gene symbols Associated with the Oligo, Based on NIA Gene Index 4
