GEO help: Mouse over screen elements for information.
Status
Public on Feb 10, 2003
Title
Affymetrix GeneChip Custom-Made Muscle Chip
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens
Description
MuscleChip containing 4,601 muscle probe sets representing 1150 known genes expressed in muscle, and 2,075 EST clusters from a non-normalized subtracted muscle sequencing project (28,074 EST sequences). This included 460 novel EST clusters, showing no match to previously characterized genes in any database. Each probe set was designed to contain 20-32 25mer oligonucleotides (10-16 paired perfect match and mismatch probe pairs per gene), with each probe evaluated for hybridization kinetics (Tm), and similarity to other sequences. Approximately 120,000 oligonucleotides were synthesized by photolithography and light-activated chemistry per microarray.
Web link
http://microarray.cnmcresearch.org/musclechipindex.asp
Submission date
Feb 10, 2003
Last update date
Oct 01, 2019
Contact name
Eric P Hoffman
E-mail(s)
ericphoffman@gmail.com
Organization name
Binghamton University - SUNY
Department
Pharmaceutical Sciences
Street address
PO Box 6000
City
Binghamton
State/province
NY
ZIP/Postal code
13902
Country
USA
Samples (63)
GSM4230 , GSM4231 , GSM4236 , GSM4241 , GSM4363 , GSM4364
GSM4367 ,
GSM4368 ,
GSM4383 ,
GSM4385 ,
GSM4386 ,
GSM4387 ,
GSM4388 ,
GSM4389 ,
GSM4390 ,
GSM4391 ,
GSM4392 ,
GSM4393 ,
GSM4394 ,
GSM4400 ,
GSM4405 ,
GSM4406 ,
GSM4407 ,
GSM4408 ,
GSM4409 ,
GSM4410 ,
GSM4411 ,
GSM4412 ,
GSM4413 ,
GSM4414 ,
GSM4415 ,
GSM4416 ,
GSM4417 ,
GSM4423 ,
GSM4424 ,
GSM4425 ,
GSM48537 ,
GSM52521 ,
GSM52522 ,
GSM175541 ,
GSM175576 ,
GSM175577 ,
GSM175578 ,
GSM175579 ,
GSM175580 ,
GSM175581 ,
GSM175582 ,
GSM175583 ,
GSM175584 ,
GSM175585 ,
GSM175586 ,
GSM175587 ,
GSM175588 ,
GSM175589 ,
GSM175590 ,
GSM175591 ,
GSM175592 ,
GSM175593 ,
GSM175594 ,
GSM175595 ,
GSM175596 ,
GSM175597 ,
GSM175598
Series (4)
GSE465
Expression profiling in the muscular dystrophies
GSE472
Congestive heart failure in dog
GSE493
Gene expression profiling in DQA1*0501+ children with untreated dermatomyositis
GSE7286
Acute molecular responses to lengthening vs shortening muscle contractions
Data table header descriptions
ID
GB_ACC
GenBank Accession;
OTHER_ACC
Description
Description
SPOT_ID
Data table
ID
GB_ACC
OTHER_ACC
Description
SPOT_ID
1001_at
X60957
HSTIEMR Human tie mRNA for putative receptor tyrosine kinase
1002_f_at
X65962
HSCP450 H.sapiens mRNA for cytochrome P-450
1009_at
U51004
HSU51004 Homo sapiens protein kinase C inhibitor (PKCI-1) mRNA, complete cds
101_at
Y09305
HSDYRK4 H.sapiens mRNA for protein kinase, Dyrk4, partial
102_at
Y09306
HSDYRK6 H.sapiens mRNA for protein kinase, Dyrk6, partial
1038_s_at
U19247
HSINFGRA7 Homo sapiens interferon-gamma receptor alpha chain gene, exon 7 and complete cds
1048_at
U38480
HSU38480 Human retinoid X receptor-gamma mRNA, complete cds
1080_s_at
L00389
HUMCYP4A7 Human cytochrome P-450 4 gene, exon 7, and three Alu repeats in the 3' flank
109_at
Z97074
HSRAB9P40 Homo sapiens mRNA for Rab9 effector p40, complete cds
1102_s_at
M10901
HUMGCRA Human glucocorticoid receptor alpha mRNA, complete cds
113_i_at
X14474
HSTAUI Human mRNA for microtubule-associated tau protein
1131_at
L11285
HUMMEK2NF Homosapiens ERK activator kinase (MEK2) mRNA
1137_at
L20852
HUMGLVR2X Human leukemia virus receptor 2 (GLVR2) mRNA, complete cds
1154_at
J02645
HUMEIF2A Human translational initiation factor (eIF-2), alpha subunit mRNA, complete cds
1156_at
J03133
HUMTFSP1 Human transcription factor SP1 mRNA, 3' end
1160_at
J04444
HUMCYC1A Human cytochrome c-1 gene, complete cds
1164_at
HG3344-HT3521
ribosomal protein L65
HG3344-HT3521
1170_at
HG1155-HT4822
calcium channel voltage-gated beta 1 subunit L type alt. transcript 2 skeletal muscle isoform
HG1155-HT4822
1182_at
D42108
HUMPLCE Human mRNA for phospholipase C, complete cds
1191_s_at
AB003102
AB003102 Homo sapiens mRNA for 26S proteasome subunit p44.5, complete cds
Total number of rows: 4653 Table truncated, full table size 317 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL246.CDF.gz
810.2 Kb
(ftp) (http)
CDF