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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 22, 2017 |
| Title |
Illumina HiSeq 4000 (Gallus gallus) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Gallus gallus |
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| Submission date |
May 22, 2017 |
| Last update date |
May 22, 2017 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (1559)
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GSM2634116, GSM2634117, GSM2634118, GSM2634119, GSM2634120, GSM2634121
GSM2634122, GSM2634123, GSM2634124, GSM2634125, GSM2634126, GSM2634127, GSM2640450, GSM2640451, GSM2640452, GSM2640453, GSM2640454, GSM2640455, GSM2745869, GSM2745870, GSM2745871, GSM2745872, GSM2745873, GSM2745874, GSM2745875, GSM2745876, GSM2745877, GSM2745878, GSM2745879, GSM2745880, GSM2745881, GSM2745882, GSM2745883, GSM2745884, GSM2745885, GSM2745886, GSM2745887, GSM2745888, GSM2745889, GSM2745890, GSM2745891, GSM2745892, GSM2745893, GSM2745894, GSM2745895, GSM2745896, GSM2883490, GSM2883491, GSM2883492, GSM2883493, GSM2883494, GSM2883495, GSM2883496, GSM2883497, GSM2883498, GSM2883499, GSM2883500, GSM2883501, GSM2891188, GSM2891189, GSM2891190, GSM2891191, GSM2891192, GSM2891193, GSM2978544, GSM2978545, GSM2978546, GSM2978547, GSM2978548, GSM2978549, GSM2978550, GSM2978551, GSM2978552, GSM2978553, GSM2978554, GSM2978555, GSM2978556, GSM2978557, GSM2978558, GSM2978559, GSM2978560, GSM2978561, GSM2978562, GSM2978563, GSM2978564, GSM2978565, GSM2978566, GSM2978567, GSM2978568, GSM2978569, GSM2978570, GSM2978571, GSM2978572, GSM2978573, GSM2978574, GSM2978575, GSM2978576, GSM2978577, GSM2978578, GSM2978579, GSM2978580, GSM2978581, GSM2978582, GSM2978583, GSM2978584, GSM2978585, GSM2978586, GSM2978587, GSM2978588, GSM2978589, GSM2978590, GSM2978591, GSM2978592, GSM2978593, GSM2978594, GSM2978595, GSM2978596, GSM2978597, GSM2978598, GSM2978599, GSM2978600, GSM2978601, GSM2978602, GSM2978603, GSM2978604, GSM2978605, GSM2978606, GSM2978607, GSM2978608, GSM2978609, GSM2978610, GSM2978611, GSM2978612, GSM2978613, GSM2978643, GSM2978644, GSM2978645, GSM2978646, GSM2978647, GSM2978648, GSM2978649, GSM2978650, GSM2978651, GSM2978652, GSM2978653, GSM2978654, GSM2978655, GSM2978656, GSM2978657, GSM2978658, GSM2978659, GSM2978660, GSM2978661, GSM2978662, GSM2978663, GSM2978664, GSM2978665, GSM2978666, GSM2978667, GSM2978668, GSM2978669, GSM2978670, GSM2978671, GSM2978672, GSM2978673, GSM2978674, GSM2978675, GSM2978676, GSM2978677, GSM2978678, GSM2978679, GSM2978680, GSM2978681, GSM2978682, GSM2978683, GSM2978684, GSM2978685, GSM2978686, GSM2978687, GSM2978688, GSM2978689, GSM2978690, GSM2978691, GSM2978692, GSM2978693, GSM2978694, GSM2978695, GSM2978696, GSM2978697, GSM2978698, GSM2978699, GSM2978700, GSM2978701, GSM2978702, GSM2978703, GSM2978704, GSM2978705, GSM2978706, GSM2978707, GSM2978708, GSM2978709, GSM2978710, GSM2978711, GSM2978712, GSM2978713, GSM3003845, GSM3003846, GSM3003847, GSM3003848, GSM3003849, GSM3003850, GSM3040886, GSM3040887, GSM3167424, GSM3167425, GSM3167426, GSM3167427, GSM3167428, GSM3167429, GSM3167430, GSM3167431, GSM3182449, GSM3182450, GSM3182451, GSM3182452, GSM3182453, GSM3182454, GSM3182455, GSM3182456, GSM3182457, GSM3325863, GSM3325864, GSM3325865, GSM3325866, GSM3325867, GSM3377968, GSM3377969, GSM3377970, GSM3377971, GSM3377972, GSM3377973, GSM3377974, GSM3377975, GSM3377976, GSM3377977, GSM3377978, GSM3377979, GSM3377980, GSM3377981, GSM3377982, GSM3377983, GSM3377984, GSM3377985, GSM3377986, GSM3377987, GSM3377988, GSM3377989, GSM3377990, GSM3377991, GSM3400736, GSM3400737, GSM3400738, GSM3400739, GSM3400740, GSM3400741, GSM3400742, GSM3400743, GSM3400744, GSM3521386, GSM3521387, GSM3521388, GSM3521389, GSM3521390, GSM3521391, GSM3521392, GSM3521393, GSM3521394, GSM3521395, GSM3521396, GSM3521397, GSM3521398, GSM3521399, GSM3521400, GSM3521401, GSM3521402, GSM3591382, GSM3591383, GSM3591384, GSM3591385, GSM3591386, GSM3591387, GSM3927182, GSM3927183, GSM3927184, GSM3927185, GSM3927186, GSM3927187, GSM3927188, GSM3927189, GSM3927190, GSM3927191, GSM3927192, GSM3927193, GSM4002526, GSM4002527, GSM4002528, GSM4002529, GSM4002530, GSM4002531, GSM4002532, GSM4002533, GSM4002534, GSM4002535, GSM4002536, GSM4002537, GSM4002538, GSM4002539, GSM4002540, GSM4002541, GSM4002542, GSM4002543, GSM4002544, GSM4002545, GSM4114105, GSM4114106, GSM4114107, GSM4114108, GSM4114109, GSM4114110, GSM4114111, GSM4114112, GSM4114113, GSM4114114, GSM4114115, GSM4114116, GSM4114117, GSM4114118, GSM4134900, GSM4134901, GSM4134902, GSM4134903, GSM4134904, GSM4134905, GSM4134906, GSM4134907, GSM4134908, GSM4134909, GSM4134910, GSM4134911, GSM4142919, GSM4142920, GSM4142921, GSM4142922, GSM4142923, GSM4142924, GSM4303418, GSM4303419, GSM4303420, GSM4303421, GSM4303422, GSM4303423, GSM4317702, GSM4317703, GSM4317704, GSM4384987, GSM4384988, GSM4384989, GSM4384990, GSM4384991, GSM4384992, GSM4411367, GSM4411368, GSM4411369, GSM4411370, GSM4411371, GSM4411372, GSM4411373, GSM4411374, GSM4411375, GSM4411376, GSM4411377, GSM4411378, GSM4508508, GSM4508509, GSM4508510, GSM4508511, GSM4508512, GSM4508513, GSM4508514, GSM4508515, GSM4710538, GSM4710539, GSM4710540, GSM4710541, GSM4799655, GSM4799656, GSM4799661, GSM4799662, GSM4799667, GSM4799668, GSM4799673, GSM4799674, GSM4799679, GSM4799680, GSM4799685, GSM4799686, GSM4799691, GSM4799692, GSM4799697, GSM4799698, GSM4799718, GSM4799719, GSM4799724, GSM4799725, GSM4799730, GSM4799731, GSM4799736, GSM4799737, GSM4799742, GSM4799743, GSM4799748, GSM4799749, GSM4799754, GSM4799755, GSM4799760, GSM4799761, GSM4799766, GSM4799767, GSM4799772, GSM4799773, GSM4799778, GSM4799779, GSM4799784, GSM4799785, GSM4799790, GSM4799791, GSM4799796, GSM4799797, GSM4799802, GSM4799803, GSM4799808, GSM4799809, GSM4800038, GSM4800039, GSM4800044, GSM4800045, GSM4800050, GSM4800051, GSM4800056, GSM4800057, GSM4800062, GSM4800063, GSM4800068, GSM4800069, GSM4800074, GSM4800075, GSM4800080, GSM4800081, GSM4800098, GSM4800099, GSM4800104, GSM4800105, GSM4800110, GSM4800111, GSM4800116, GSM4800117, GSM4800122, GSM4800123, GSM4800128, GSM4800129, GSM4800134, GSM4800135, GSM4800140, GSM4800141, GSM4871465, GSM4871466, GSM4871467, GSM4871468, GSM4871469, GSM4871470, GSM4871471, GSM4871472, GSM4871473, GSM4871474, GSM4871475, GSM4871476, GSM4972461, GSM4972462, GSM4972463, GSM4972464, GSM4972465, GSM4972466, GSM5066717, GSM5066718, GSM5066719, GSM5066720, GSM5066721, GSM5066722, GSM5066723, GSM5066724...
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| Series (62)
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| GSE99146 |
Myoz3 overexpression and knockdown CEFs |
| GSE99286 |
The mechanism research of differentially expressed circRNAs in ALV-J-induced tumor chickens |
| GSE102740 |
Mitotic chromosomes fold by condensin-dependent helical winding of chromatin loop arrays |
| GSE107928 |
Molecular profiling of the mature Organiser (Hensen's node) as a stem zone. |
| GSE108147 |
Genome-wide analysis of differentially expressed profiles of mRNAs, lncRNAs and circRNAs in Cryptosporidium baileyi infection |
| GSE110145 |
Genome-wide association study and transcriptome analysis provide new insights into the white/red earlobe color formation in chicken |
| GSE110591 |
RNA-Seq study of gene expression in feather branching |
| GSE111840 |
A systems biology approach for understanding the transcriptome wide modulation of cardiac gene expression under oxidative environment during early stage of cardiovascular remodeling in developing embryo |
| GSE115131 |
Overexpression of chicken IRF7 increased viral replication and programmed cell death to the avian influenza virus infection through TGF-beta/FoxO signaling axis in DF-1 |
| GSE115561 |
Similarities and differences in the regulation of HoxD genes during chick and mouse limb development [ChIP-Seq] |
| GSE115563 |
Similarities and differences in the regulation of HoxD genes during chick and mouse limb development. |
| GSE118374 |
Gene expression in chicken wing flight feather regeneration |
| GSE119590 |
Chicken IRF7 knockout by CRISPR-Cas9 in DF-1 and in vitro H6N2 infection followed by RNA-seq |
| GSE120434 |
RNA-Seq Analysis of Periocular Neural Crest and Embryonic Corneal Transcriptomes |
| GSE124133 |
Integrated analysis of lncRNA and mRNA repertoires in Marek's disease infected spleens identifies genes relevant to resistance |
| GSE126082 |
Comparative transcriptomic and proteomic analyses provide insights into functional genes for hypoxic adaptation in embryos of Tibetan chickens |
| GSE133771 |
RNA-Seq profiling in two chicken cell lines, LMH and DF1 with different susceptibiltiy to H9N2 avian influenza virus |
| GSE135272 |
RNA-Seq analysis of broiler intestinal transcriptome reveals new insight on the interaction between antibiotic growth promoters (AGPs) and the host |
| GSE138600 |
Genome-wide studies of circular RNAs in Marek's tumorigenesis in Chicken (circRNA-Seq) |
| GSE139256 |
Timeless collaborates with DDX11 to ensure processive replication of G4-forming DNA [RNA-seq] |
| GSE139525 |
Dysbacteriosis-induced LPS elevation disturbs the development of muscle progenitor cells by interfering with retinoic acid signaling [RNA-seq] |
| GSE139526 |
Dysbacteriosis-induced LPS elevation disturbs the development of muscle progenitor cells by interfering with retinoic acid signaling |
| GSE144982 |
Comparative Transcriptome Analysis Identifies Candidate Genes Related to Skin Color Differentiation in Chicken |
| GSE145398 |
Genomic location of H4R3me2a and H3R2me2s in chicken polychromatic erythrocytes |
| GSE146411 |
RNA sequencing of Hes5.3+ cells from E5 chick embryonic retinas in control and retinoic acid treated conditions. |
| GSE146956 |
Transcriptome analysis of feather follicles reveals candidate genes and pathways associated with pheomelanin pigmentation in chickens |
| GSE149663 |
miR-199 Family Regulates Sonic Hedgehog Expression During Craniofacial Development. |
| GSE153566 |
Clustering of strong replicators associated with active promoters is sufficient to establish an early-replicating domain |
| GSE158416 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (CTCF ChIP-Seq) |
| GSE158418 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27ac ChIP-Seq) |
| GSE158419 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27me3 ChIP-Seq) |
| GSE158427 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K4me1 ChIP-Seq) |
| GSE158429 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K4me3 ChIP-Seq) |
| GSE158430 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility |
| GSE160324 |
Comprehensive analysis of coding and non-Coding RNA transcriptomes related to hypoxic adaptation in the Tibetan chickens |
| GSE163135 |
RNA-Seq for ALV-J-susceptible and ALV-J-resistant chickens |
| GSE166240 |
Transcriptome-wide N6-methyladenosine modification profiling of long non-coding RNAs and circular RNA during growth of Marek’s disease virus in vitro |
| GSE166626 |
A functional map of genomic HIF1α-DNA complexes in the eye lens revealed through multiomics analysis [CUT&RUN] |
| GSE166633 |
A functional map of genomic HIF1α-DNA complexes in the eye lens revealed through multiomics analysis |
| GSE166905 |
Transcriptome Analysis Revealed Ameliorative Effects of Bacillus Based Probiotic on Immunity and Metabolism under an Experimentally Induced Eimeria tenella Infection in Chicken |
| GSE168084 |
Sox8 reprograms ectoderm into ear vesicles and associated neurons [Lmx1aE1_rnaseq] |
| GSE168087 |
Sox8 reprograms ectoderm into ear vesicles and associated neurons [Sox8OE_rnaseq] |
| GSE168088 |
Sox8 reprogram ectoderm into ear vesicles and auditory neurons [smartseq2] |
| GSE168089 |
Sox8 reprogram ectoderm into ear vesicles and auditory neurons |
| GSE175615 |
Conservation and divergence of DNA methylation patterns and functions in vertebrates |
| GSE176521 |
Position Specific Alternative Splicing and Gene Expression Profiles along the Tonotopic Axis of Chick Cochlea |
| GSE179459 |
Multi-omics association reveals the effects of intestinal microbiome-host interactions on fat deposition in broiler lines divergently selected for abdominal fat content |
| GSE189591 |
m6A sequencing analysis of chicken hepatic mRNA under normal and LPS stimulated conditions |
| GSE192740 |
Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches (single cells) |
| GSE192742 |
Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches |
| GSE194418 |
Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds [ChIP-seq] |
| GSE194423 |
Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds [Hi-C] |
| GSE195592 |
Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds |
| GSE197935 |
Chromatin accessibility (ATAC-seq) in the developing chicken retinal pigment epithelium |
| GSE197938 |
OTX2 regulatory network and maturation-associated gene programs are inherent barriers to RPE neural competency |
| GSE202739 |
Single-cell sequencing of chicken spleen |
| GSE223189 |
Notochord and axial progenitor generation by timely BMP and NODAL inhibition during vertebrate trunk formation |
| GSE237492 |
Elastic Fibers Define Embryonic Tissue Stiffness to Enable Buckling Morphogenesis of the Small Intestine |
| GSE242796 |
Formation of Müller glia-derived progenitor cells in retinas depleted of microglia |
| GSE245083 |
Transcriptome Analysis Reveals Differentially Expressed Genes and Pathways for Oviduct Development and Defense in Prelaying and Laying Hens |
| GSE264042 |
Pronounced early differentiation underlies zebra finch gonadal germ cell development. |
| GSE267653 |
An in vivo CRISPR screen in chick embryos reveals a role for MLLT3 in specification of neural cells from the caudal epiblast |
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| Supplementary data files not provided |
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