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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jan 12, 2017 |
| Title |
HiSeq X Ten (Sus scrofa) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Sus scrofa |
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| Submission date |
Jan 12, 2017 |
| Last update date |
Jan 12, 2017 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (1807)
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GSM2454742, GSM2454743, GSM2836931, GSM2836932, GSM2836933, GSM2991937
GSM2991938, GSM2991939, GSM2991940, GSM3145320, GSM3145321, GSM3145322, GSM3145323, GSM3258640, GSM3258641, GSM3258642, GSM3258643, GSM3258644, GSM3258645, GSM3314447, GSM3314448, GSM3314449, GSM3314450, GSM3314451, GSM3314452, GSM3453152, GSM3453153, GSM3453154, GSM3453155, GSM3453156, GSM3453157, GSM3453158, GSM3453159, GSM3453160, GSM3453161, GSM3453162, GSM3453163, GSM3453164, GSM3453165, GSM3453166, GSM3453167, GSM3453168, GSM3453169, GSM3453170, GSM3453171, GSM3453172, GSM3453173, GSM3453174, GSM3453175, GSM3453176, GSM3453177, GSM3453178, GSM3453179, GSM3453180, GSM3453181, GSM3453182, GSM3453183, GSM3453184, GSM3453185, GSM3453186, GSM3453187, GSM3453188, GSM3453189, GSM3453190, GSM3453191, GSM3516925, GSM3516926, GSM3516927, GSM3516928, GSM3516929, GSM3516930, GSM3516931, GSM3516932, GSM3516933, GSM3516934, GSM3576291, GSM3576292, GSM3576293, GSM3576294, GSM3576295, GSM3576296, GSM3580674, GSM3580675, GSM3580676, GSM3580677, GSM3580678, GSM3580679, GSM3580680, GSM3580681, GSM3580682, GSM3580683, GSM3580684, GSM3580685, GSM3580686, GSM3580687, GSM3580688, GSM3580689, GSM3580690, GSM3580691, GSM3580692, GSM3580693, GSM3580694, GSM3580695, GSM3580696, GSM3839787, GSM3839788, GSM3839789, GSM3839790, GSM3839791, GSM3839792, GSM3856157, GSM3856158, GSM3856159, GSM3856160, GSM3856161, GSM3856162, GSM3856163, GSM3856164, GSM3856165, GSM3856166, GSM3856167, GSM3856168, GSM3856169, GSM3856170, GSM3856171, GSM3856172, GSM3881051, GSM3881052, GSM3881053, GSM3881054, GSM3881055, GSM3881056, GSM3932575, GSM3932576, GSM3932577, GSM3932578, GSM3932579, GSM3932580, GSM3932581, GSM3932582, GSM3932583, GSM3932584, GSM3932585, GSM3932586, GSM3932587, GSM3932588, GSM3932589, GSM3932590, GSM4052384, GSM4052385, GSM4052386, GSM4052387, GSM4052388, GSM4052389, GSM4142694, GSM4142695, GSM4142696, GSM4142697, GSM4142698, GSM4142699, GSM4142700, GSM4142701, GSM4142702, GSM4142703, GSM4142704, GSM4142705, GSM4142706, GSM4142707, GSM4142708, GSM4142709, GSM4142710, GSM4142711, GSM4142712, GSM4142713, GSM4142714, GSM4142715, GSM4142716, GSM4142717, GSM4142718, GSM4142719, GSM4142720, GSM4142721, GSM4142722, GSM4142723, GSM4142724, GSM4142725, GSM4142726, GSM4142727, GSM4142728, GSM4142729, GSM4142730, GSM4142731, GSM4142732, GSM4142733, GSM4142734, GSM4142735, GSM4142736, GSM4142737, GSM4142738, GSM4142739, GSM4142740, GSM4142741, GSM4142742, GSM4142743, GSM4142744, GSM4142745, GSM4142746, GSM4142747, GSM4142748, GSM4142749, GSM4142750, GSM4142751, GSM4142752, GSM4142753, GSM4142754, GSM4142755, GSM4142756, GSM4142757, GSM4142758, GSM4142759, GSM4142760, GSM4142761, GSM4142762, GSM4142763, GSM4142764, GSM4142765, GSM4142766, GSM4142767, GSM4142768, GSM4142769, GSM4142770, GSM4142771, GSM4142772, GSM4142773, GSM4142774, GSM4142775, GSM4142776, GSM4142777, GSM4142778, GSM4142779, GSM4142780, GSM4142781, GSM4142782, GSM4142783, GSM4142784, GSM4160860, GSM4160861, GSM4160862, GSM4160863, GSM4160864, GSM4160865, GSM4256199, GSM4256200, GSM4256201, GSM4256202, GSM4256203, GSM4256204, GSM4256205, GSM4256206, GSM4256207, GSM4256208, GSM4256209, GSM4256210, GSM4256211, GSM4256212, GSM4256213, GSM4256214, GSM4256215, GSM4256216, GSM4256217, GSM4256218, GSM4256219, GSM4256220, GSM4256221, GSM4256222, GSM4256223, GSM4256224, GSM4256225, GSM4256226, GSM4256227, GSM4256228, GSM4256229, GSM4256230, GSM4256231, GSM4256232, GSM4256233, GSM4256234, GSM4256235, GSM4256236, GSM4256237, GSM4256238, GSM4256239, GSM4256240, GSM4256241, GSM4256242, GSM4256243, GSM4256244, GSM4256245, GSM4256246, GSM4256247, GSM4256248, GSM4256249, GSM4256250, GSM4256251, GSM4256252, GSM4256253, GSM4256254, GSM4256255, GSM4256256, GSM4256257, GSM4256258, GSM4256259, GSM4256260, GSM4256261, GSM4256262, GSM4256263, GSM4256264, GSM4256265, GSM4256266, GSM4256267, GSM4256268, GSM4256269, GSM4256270, GSM4256271, GSM4256272, GSM4256273, GSM4256274, GSM4256275, GSM4256276, GSM4256277, GSM4256278, GSM4256279, GSM4256280, GSM4256281, GSM4256282, GSM4256283, GSM4256284, GSM4256285, GSM4256286, GSM4256287, GSM4256288, GSM4256289, GSM4256290, GSM4256291, GSM4256292, GSM4256293, GSM4256294, GSM4256295, GSM4256296, GSM4256297, GSM4256298, GSM4256299, GSM4256300, GSM4256301, GSM4256302, GSM4256303, GSM4256304, GSM4256305, GSM4256306, GSM4256307, GSM4256308, GSM4256309, GSM4256310, GSM4256311, GSM4256312, GSM4256313, GSM4256314, GSM4256315, GSM4256316, GSM4256317, GSM4256318, GSM4256319, GSM4256320, GSM4256321, GSM4256322, GSM4256323, GSM4256324, GSM4256325, GSM4256326, GSM4256327, GSM4256328, GSM4256329, GSM4256330, GSM4256331, GSM4256332, GSM4256333, GSM4256334, GSM4256335, GSM4256336, GSM4256337, GSM4256338, GSM4256339, GSM4256340, GSM4256341, GSM4256342, GSM4256343, GSM4256344, GSM4256345, GSM4256346, GSM4256347, GSM4256348, GSM4256349, GSM4256350, GSM4256351, GSM4256352, GSM4256353, GSM4256354, GSM4256355, GSM4256356, GSM4256357, GSM4256358, GSM4256359, GSM4256360, GSM4256361, GSM4256362, GSM4256363, GSM4256364, GSM4256365, GSM4256366, GSM4256367, GSM4256368, GSM4256369, GSM4256370, GSM4256371, GSM4256372, GSM4256373, GSM4256374, GSM4256375, GSM4256376, GSM4256377, GSM4256378, GSM4256379, GSM4256380, GSM4256381, GSM4256382, GSM4256383, GSM4256384, GSM4256385, GSM4256387, GSM4256388, GSM4256389, GSM4256390, GSM4256391, GSM4256392, GSM4256393, GSM4256395, GSM4256396, GSM4256397, GSM4256398, GSM4256400, GSM4256401, GSM4332110, GSM4332111, GSM4332112, GSM4332113, GSM4332114, GSM4332115, GSM4332116, GSM4332117, GSM4340133, GSM4340134, GSM4340135, GSM4340136, GSM4340137, GSM4340138, GSM4340139, GSM4340140, GSM4340141, GSM4340142, GSM4340143, GSM4340144, GSM4404607, GSM4404608, GSM4404609, GSM4420141, GSM4420142, GSM4420143, GSM4420144, GSM4420145, GSM4420146, GSM4509252, GSM4509253, GSM4509254, GSM4509255, GSM4509256, GSM4509257, GSM4616534, GSM4616535, GSM4616536, GSM4616537, GSM4634987, GSM4634988, GSM4634989, GSM4634990, GSM4634991, GSM4634992, GSM4640595, GSM4640596, GSM4640597, GSM4644389...
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You can also download a list of all accessions here
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| Series (87)
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| GSE93563 |
Comparative DNA Methylation analysis reveals genes regulating adipogenesis in Laiwu pigs over two developmental stages |
| GSE106381 |
Long non-coding RNAs and mRNAs profiling during spleen development in pig |
| GSE110478 |
Genome-wide identification and comparison of mRNAs, lncRNAs, and circRNAs in porcine intramuscular, subcutaneous, retroperitoneal, and mesenteric adipose tissues |
| GSE114583 |
Transcriptome analysis of mRNAs, lncRNAs, and circRNAs during the differentiation of porcine subcutaneous preadipocytes |
| GSE116701 |
Analysis of Wild Type and Leptin-overexpressing Pig PBMC Transcriptomes |
| GSE117882 |
Global Long Noncoding RNA and mRNA Expression Changes between Prenatal and Neonatal Lung Tissue in Pigs |
| GSE122027 |
Multi-omics profiling highlights lipid metabolism alterations of pigs fed with low-dose antibiotics |
| GSE123923 |
Temporal Expression Profiling of Global Long Noncoding RNA and mRNA during Development in Pig Whole-blood |
| GSE125517 |
Transcriptional Profiling of Black and White Skins Reveals Expression Patterns of mRNA and lncRNA changes for lacking melanocyte in Bama pig |
| GSE125706 |
Characterization and comparative analyses of transcriptomes of cloned and in vivo fertilized porcine pre-implantation embryos |
| GSE132049 |
Genome-wide identification and analysis of long noncodingRNAs in porcine preadipocytes treated with TGF-β1 |
| GSE132307 |
MicroRNA transcriptome profiling in ovarian tissues of pigs with extreme phenotypes for reproductive efficiency during the luteal and follicular phases of the estrous cycle |
| GSE132618 |
Melatonin protects against defects induced by malathion during porcine oocyte maturation |
| GSE134001 |
Transcriptome profiling of ovarian tissues from pigs with extreme phenotypes for reproductive efficiency during the luteal and follicular phases of the estrous cycle |
| GSE134002 |
Profiling in ovarian tissues of pigs with extreme phenotypes for reproductive efficiency during the luteal and follicular phases of the estrous cycle |
| GSE136592 |
Genome-wide differential expression profiling of ovarian circRNAs associated with litter size in pigs |
| GSE139512 |
Lineage specification and pluripotency revealed by transcriptome analysis from oocyte to blastocyst in pig |
| GSE140414 |
Derivation of Porcine Extraembryonic Endoderm-like Cells from from Blastocysts |
| GSE143288 |
A compendium map of Cis-Regulatory Elements in the Pig Genome and epigenetic comparison with the human Genome |
| GSE145751 |
The use of autologous peritoneum for mucosal replacement following ileal neobladder construction: a novel technique in a porcine model |
| GSE145954 |
Whole Transcriptome analysis for porcine alveolar macrophage infected by African Swine Fever Virus |
| GSE146715 |
Dual RNA-seq analyses of porcine alveolar macrophage and Toxoplasma during infection process |
| GSE147188 |
Expression profiles of circular RNAs in ST cells uninfected or infected by PDCoV |
| GSE149711 |
Identification of lncRNAs involved in the PCV2 infection of PK-15 cells |
| GSE152492 |
Non-viral Induction of Transgene-free iPSCs from Somatic Fibroblasts of Multiple Mammalian Species [pig] |
| GSE152493 |
Non-viral Induction of Transgene-free iPSCs from Somatic Fibroblasts of Multiple Mammalian Species |
| GSE153157 |
Ascorbic acid promotes the reproductive function of porcine immature Sertoli cells through transcriptome reprogramming |
| GSE153330 |
Dual RNA-seq analysis of pig alveolar macrophage infected with china-isolated TgHB1 compared to TgRH and TgMe49 toxoplasma gondii standard strain |
| GSE153450 |
The asynchronous establishment of chromatin 3D architecture between in vitro fertilized and uniparental preimplantation pig embryos [Hi-C] |
| GSE153451 |
The asynchronous establishment of chromatin 3D architecture between in vitro fertilized and uniparental preimplantation pig embryos [ChIP-seq] |
| GSE153452 |
The asynchronous establishment of chromatin 3D architecture between in vitro fertilized and uniparental preimplantation pig embryos |
| GSE156439 |
Whole genome bisulfite sequencing (WGBS) of porcine parthenogenetic embryos and wild-type controls. |
| GSE157043 |
Whole-genome bisulfite sequencing across 27 developmental stages in Sus scrofa skeletal muscle |
| GSE157044 |
RNA-seq across 27 developmental stages in Sus scrofa skeletal muscle |
| GSE157045 |
27 developmental stages in Sus scrofa skeletal muscle |
| GSE157650 |
SIN3A regulates porcine early embryonic development by modulating CCNB1 expression |
| GSE160334 |
Single cell RNA-seq reveals mRNAs and lncRNAs important for oocyte meiosis and maturation in pigs |
| GSE161068 |
SIRT6 maintains redox homeostasis to promote porcine oocyte maturation |
| GSE161525 |
Resolving multiple epigenetic barriers to pig SCNT-mediated reprogramming during embryonic genome activation [ChIP-Seq] |
| GSE161526 |
Resolving multiple epigenetic barriers to pig SCNT-mediated reprogramming during embryonic genome activation [RNA-Seq] |
| GSE161527 |
Resolving multiple epigenetic barriers to pig SCNT-mediated reprogramming during embryonic genome activation |
| GSE161563 |
Identification of chromatin accessibility during the early stage of pig SCNT embryo reprogramming by ATAC-seq |
| GSE162145 |
A Pig BodyMap Transcriptome Reveals Diverse Tissue Physiologies and Evolutionary Dynamics of Transcription [RNA-Seq pig] |
| GSE162146 |
A Pig BodyMap Transcriptome Reveals Diverse Tissue Physiologies and Evolutionary Dynamics of Transcription [RNA-Seq for pig and rat] |
| GSE162148 |
A Pig BodyMap Transcriptome Reveals Diverse Tissue Physiologies and Evolutionary Dynamics of Transcription |
| GSE163620 |
The conservation and divergence of epigenitic reprogramming during mammalian early development |
| GSE163709 |
key histone modifications in porcine oocytes and early embryos |
| GSE164812 |
Single cell transcriptome sequencing reveals key molecules and pathways underlying the development of in vitro fertilized and pathenogenetically activated early embryos in pigs |
| GSE164993 |
Next Generation Sequencing of miRNA in PRRSV-infected PAMs |
| GSE166152 |
Early blood transcriptomic markers of necrotizing enterocolitis in preterm piglets |
| GSE166346 |
Reorganization of chromatin architecture during prenatal development of porcine skeletal muscle |
| GSE167580 |
Comparative 3D Genome Architecture in Vertebrates (RNA-Seq) |
| GSE167581 |
Comparative 3D Genome Architecture in Vertebrates |
| GSE168047 |
Pre and post Classical Swine Fever (CSF) vaccination PBMC transcriptomes of Indian Ghurrah and Landrance pigs |
| GSE168103 |
Generation and Characterization of Stable Pig Pre-gastrulation Epiblast Stem Cell Lines [ChIP-seq] |
| GSE168106 |
Generation and Characterization of Stable Pig Pre-gastrulation Epiblast Stem Cell Lines [single-cell RNA-seq] |
| GSE168107 |
Generation and Characterization of Stable Pig Pre-gastrulation Epiblast Stem Cell Lines |
| GSE173275 |
Chromatin structure programs between genetically matched PEF and porcine iPSCs |
| GSE173308 |
Chromatin structure and gene expression programs between genetically matched PEF and porcine iPSCs |
| GSE175641 |
FOXO1 mediates hypoxia-induced G0/G1 arrest in ovarian somatic granulosa cells via activating the TP53INP1-p53-CDKN1A pathway |
| GSE176387 |
Three-dimensional geome study of procine livers during development and metabolic adaptation |
| GSE180840 |
Integrative ATAC-seq and RNA-seq Analysis of the Longissimus Muscle of Luchuan and Duroc Pigs |
| GSE183447 |
Reorganization of 3D genome architecture across wild boar and Bama pig adipose tissues |
| GSE184038 |
Distinct Patterns of Insulin response, sexual development, organ size regulation in postnatal developing Subcutaneous and Visceral fat of Bama Pig |
| GSE188588 |
Hierarchical accumulation of histone variant H2A.Z regulates transcriptional states and histone modifications in early mammalian embryos [ChIP-seq] |
| GSE188590 |
Hierarchical accumulation of histone variant H2A.Z regulates transcriptional states and histone modifications in early mammalian embryos |
| GSE195527 |
Whole genome bisulfite sequencing (WGBS) using porcine parthenogenetic embryos and biparental controls |
| GSE195528 |
Porcine parthenogenetic embryos and biparental controls |
| GSE199237 |
Identification and analysis of circRNAs in the prefrontal cortex of wild boar and domestic pig |
| GSE206539 |
Dynamic chromatin architecture of the porcine adipose tissues with weight gain and loss |
| GSE212691 |
Transcriptome analysis of PK-15 cells expressing CSFV NS4A |
| GSE214153 |
To investigate the mechanisms of CDCA regulates proliferation of Porcine Small Intestinal Epithelial Cells (IPEC-J2) |
| GSE216002 |
Integrating Transcriptomic and ChIP-Seq Reveals Important Regulatory Regions Modulating Gene Expression in Myometrium during Implantation in Pigs [RNA-seq] |
| GSE216440 |
Integrating Transcriptomic and ChIP-Seq Reveals Important Regulatory Regions Modulating Gene Expression in Myometrium during Implantation in Pigs |
| GSE218486 |
WGBS of parthenogenetic pig embryos |
| GSE218487 |
RNA-seq and WGBS of parthenogenetic pig embryos |
| GSE218870 |
Ssc-miR-221-3p regulates melanin production in Xiang pigs melanocytes by targeting the TYRP1 gene |
| GSE227425 |
A cell transcriptomic profile reveals the molecular mechanisms of adipocytes in mammary gland across development |
| GSE229521 |
Profiling of chromatin accessibility across multiple tissues and developmental stages of pig [RNA-seq] |
| GSE229522 |
Profiling of chromatin accessibility across multiple tissues and developmental stages of pig |
| GSE234116 |
Single-cell multi-omics profiling reveals key regulatory mechanisms that poise germinal vesicle oocytes for maturation in pigs |
| GSE235729 |
Single-cell multi-omics profiling reveals key regulatory mechanisms that poise germinal vesicle oocytes for maturation in pigs |
| GSE235731 |
Single-cell multi-omics profiling reveals key regulatory mechanisms that poise germinal vesicle oocytes for maturation in pigs |
| GSE237134 |
Single-cell RNA sequencing analysis of porcine ovarian somatic cells in antral follicles |
| GSE254992 |
The architecture of the Porcine deltacoronavirus RNA genome inside virions by vRICseq |
| GSE263495 |
Lineage-specific genomic imprinting in the ZNF791 locus [BiSulfite-seq] |
| GSE264551 |
Translatomics reveals the role of dietary calcium addition in regulating muscle fat deposition in pigs |
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| Supplementary data files not provided |
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