GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Platform GPL22200 Query DataSets for GPL22200
Status Public on Jul 23, 2016
Title 017617 IMUL-Candida glabrata 8x15k [Probe name version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Nakaseomyces glabratus CBS 138
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site:
Description The nucleotide sequences of the 5283 C. glabrata ORFs and the mitochondrial genome (release 2) were downloaded from the GĂ©nolevure Consortium ( Following the Agilent eArray Design guidelines, two separate probe sets for each ORF were designed, each consisting of 60 base oligonucleotides. The probe selection was performed using the GE Probe Design Tool; probes were filtered following their base composition and distribution, cross-hybridization potential and melting temperature to yield two probes sets representing each 5210 nuclear and 6 mitochondrial ORFs. These probes cover more than 98% of the nuclear genome and represent 6 out of the 8 mitochondrial protein-encoding genes. For quality control and normalization purposes, 103 probes were selected randomly and spotted 20 times throughout each array in addition to standard Agilent controls. C. glabrata custom arrays were manufactured in the 8x15k format by Agilent Technologies.
Design ID 017617
Submission date Jul 22, 2016
Last update date Jul 23, 2016
Contact name GEO admin
Organization name NCBI/NLM/NIH
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Alternative to GPL10713 (gene name version)

Data table header descriptions
DESCRIPTION Gene Description

Data table
GE_BrightCorner GE_BrightCorner
DarkCorner DarkCorner
CUST_6177_PI334573506 CAGL0G07425g CAGL0G07425g highly similar to sp P1527 Saccharomyces cerevisiae YML035c AMD1 AMP deaminase, hypothetical start [Candida glabrata] Complete CDS. CAGL0G07425g
CUST_9313_PI334573506 CAGL0M03047g CAGL0M03047g weakly similar to sp P23797 Saccharomyces cerevisiae YMR281w GPI12, N-acetylglucosaminyl phosphatidylinositol deacetylase, hypothetical start [Candida glabrata] Complete CDS. CAGL0M03047g
CUST_2181_PI334573506 CAGL0L11836g CAGL0L11836g weakly similar to sp P33306 Saccharomyces cerevisiae YER167w suppressor of mutations in protein kinase C pathway components, hypothetical start [Candida glabrata] Complete CDS. CAGL0L11836g
CUST_1540_PI334573506 CAGL0L08844g CAGL0L08844g similar to sp P22516 Saccharomyces cerevisiae YPL008w CHL1 protein of the DEAH box family, start by similarity [Candida glabrata] Complete CDS. CAGL0L08844g
CUST_6827_PI334573506 CAGL0H05753g CAGL0H05753g similar to tr Q02890 Saccharomyces cerevisiae YPL096w PNG1, hypothetical start [Candida glabrata] Complete CDS. CAGL0H05753g
CUST_9082_PI334573506 CAGL0C04477g CAGL0C04477g similar to tr Q12124 Saccharomyces cerevisiae YDL005c MED2 transcriptional regulation mediator, hypothetical start [Candida glabrata] Complete CDS. CAGL0C04477g
CUST_2281_PI334573506 CAGL0E00187g CAGL0E00187g no similarity, hypothetical start [Candida glabrata] Complete CDS. CAGL0E00187g
CUST_6825_PI334573506 CAGL0F00275g CAGL0F00275g highly similar to sp P32458 Saccharomyces cerevisiae YJR076c CDC11 septin, start by similarity [Candida glabrata] Complete CDS. CAGL0F00275g
CUST_1602_PI334573506 CAGL0F04257g CAGL0F04257g similar to sp P38199 Saccharomyces cerevisiae YBL032w, hypothetical start [Candida glabrata] Complete CDS. CAGL0F04257g
CUST_6168_PI334573506 CAGL0G00220g CAGL0G00220g highly similar to sp P15703 Saccharomyces cerevisiae YGR282c BGL2, start by similarity [Candida glabrata] Complete CDS. CAGL0G00220g
CUST_9379_PI334573506 CAGL0M06435g CAGL0M06435g similar to sp P38126 Saccharomyces cerevisiae YBR186w PCH2, start by similarity [Candida glabrata] Complete CDS. CAGL0M06435g
CUST_5107_PI334573506 CAGL0J02002g CAGL0J02002g similar to sp P40556 Saccharomyces cerevisiae YIL006w or sp P39953 Saccharomyces cerevisiae YEL006w, hypothetical start [Candida glabrata] Complete CDS. CAGL0J02002g
CUST_6365_PI334573506 CAGL0H07645g CAGL0H07645g weakly similar to sp P53061 Saccharomyces cerevisiae YGL249w ZIP2, hypothetical start [Candida glabrata] Complete CDS. CAGL0H07645g
CUST_5489_PI334573506 CAGL0D02926g CAGL0D02926g similar to sp P43132 Saccharomyces cerevisiae YLR015w BRE2, start by similarity [Candida glabrata] Complete CDS. CAGL0D02926g
CUST_9599_PI334573506 CAGL0F00407g CAGL0F00407g highly similar to sp P47120 Saccharomyces cerevisiae YJR070c, start by similarity [Candida glabrata] Complete CDS. CAGL0F00407g
CUST_6799_PI334573506 CAGL0M12430g CAGL0M12430g highly similar to sp P41277 Saccharomyces cerevisiae YIL053w RHR2 or sp P40106 Saccharomyces cerevisiae YER062c GPP2, hypothetical start [Candida glabrata] Complete CDS. CAGL0M12430g
CUST_1177_PI334573506 CAGL0C03553g CAGL0C03553g similar to sp P07390 Saccharomyces cerevisiae YNR045w PET494 translational activator, hypothetical start [Candida glabrata] Complete CDS. CAGL0C03553g
CUST_4647_PI334573506 CAGL0D05918g CAGL0D05918g similar to sp P53296 Saccharomyces cerevisiae YGR177c ATF2 alcohol O-acetyltransferase or sp P40353 Saccharomyces cerevisiae YOR377w ATF1, hypothetical start [Candida glabrata] Complete CDS. CAGL0D05918g

Total number of rows: 10488

Table truncated, full table size 1937 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap