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Platform GPL22112 Query DataSets for GPL22112
Status Public on Jul 06, 2016
Title Agilent-037581 rhesus promoter tiling 2011 array (Feature number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Macaca mulatta
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Annotations based on rheMac2:BCMV1:Jan2006


Arrays of this design have barcodes that begin with 16037581 or 2537581.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jul 05, 2016
Last update date Jul 19, 2016
Contact name Moshe Szyf
E-mail(s) moshe.szyf@mcgill.ca
Organization name McGill University
Department Pharmacology
Street address McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
City Montreal
State/province Quebec
ZIP/Postal code H3G 1Y6
Country Canada
 
Samples (64) GSM2225713, GSM2225714, GSM2225715, GSM2225716, GSM2225717, GSM2225718 
Series (3)
GSE84020 DNA methylation signatures of parental deprivation in peripheral tissues of male rhesus macaques
GSE84024 Early life adversity alters normal sex-dependent developmental dynamics of DNA methylation in rhesus monkeys
GSE84028 Ankyrin-3 as a Molecular Marker of Early Life Stress and Vulnerability to Psychiatric Disorders

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ENSEMBL_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
CHROMOSOMAL_LOCATION Chromosomal Location
CHROMOSOME Chromosome
RANGE_GB RefSeq accession.version
RANGE_START the start position (relative to the RANGE_GB accession)
RANGE_END the end position (relative to the RANGE_GB accession)
SEQUENCE Probe sequence

Data table
ID COL ROW SPOT_ID CONTROL_TYPE ENSEMBL_ACC GENE_SYMBOL CHROMOSOMAL_LOCATION CHROMOSOME RANGE_GB RANGE_START RANGE_END SEQUENCE
1 1 1 DarkCorner pos
2 2 1 DarkCorner pos
3 3 1 DarkCorner pos
4 4 1 GT_rheMac2_chr3:47150357-47152857_4 FALSE ens|ENSMMUT00000031634:51502 CYP3A43 chr3:47150477-47150536 chr3 NC_007860.1 47150477 47150536 ACCATCATCAGTCCCACCCTCTTGCTCATGAGCACAGCATAGCGCAGTAGATGACAGATG
5 5 1 GT_rheMac2_chr4:41170220-41172720_17 FALSE ens|ENSMMUT00000005203:-69 NCR2 chr4:41172100-41172159 chr4 NC_007861.1 41172100 41172159 TGCTGGAAGAGCAGCAGAATCAGGCCCAGCTCCCAGTTCCCTCTCCCCAGTCTTCTCCAG
6 6 1 GT_rheMac2_chr8:127114969-127118842_8 FALSE ens|ENSMMUT00000021719:1439 TATDN1 chr8:127115449-127115508 chr8 NC_007865.1 127115449 127115508 GATTTAGTTGTATAACATAAACACACTTTTAAAAAGTTATGTGGCCTTTCTTTATGGAGG
7 7 1 GT_rheMac2_chr14:65721001-65724757_1 FALSE ens|ENSMMUT00000010826:1806 FXC1 chr14:65721001-65721060 chr14 NC_007871.1 65721001 65721060 GATGATGGAAAGCTGGAATTAGGAGATTCTAGACAAGCAGTGAAACATTAAGGTAGCATT
8 8 1 GT_rheMac2_chr1:54810617-54813117_15 FALSE ens|ENSMMUT00000019702:-130 RAB3B chr1:54811297-54811356 chr1 NC_007858.1 54811297 54811356 ACTCAGAATCACTCCATCACTATACCTGCCCCAAATGTTGTCTCAGCACTGGGGTGGAAC
9 9 1 GT_rheMac2_chr15:38699518-38702018_21 FALSE ens|ENSMMUT00000017196:-850 TMOD1 chr15:38700918-38700977 chr15 NC_007872.1 38700918 38700977 AACCAGGGTTCACCTCTGCTGCTTCCCAGACTGCTCTCTCTTGCTGGAGAAGCCTACCGT
10 10 1 GT_rheMac2_chr7:123578344-123580844_20 FALSE ens|ENSMMUT00000028061:-930 NA chr7:123579824-123579883 chr7 NC_007864.1 123579824 123579883 TCTGCATAGAAGACAAGCATTTTGACATGTCTGAGAACTTTAGCCAGTGGCACCAAAGCT
11 11 1 GT_rheMac2_chr13:108158630-108161130_6 FALSE ens|ENSMMUT00000033465:-1509 SULT1C4 chr13:108159070-108159129 chr13 NC_007870.1 108159070 108159129 TAACCTCCCCCGTCTCCCAGCCCTCCCCCTCTAGCACACAACGCACTAGTCAAAACTGCT
12 12 1 GT_rheMac2_chr13:86241841-86244341_18 FALSE ens|ENSMMUT00000025039:-1410 SFTPB chr13:86243801-86243860 chr13 NC_007870.1 86243801 86243860 CACACTCAAGGTTACCCAAGGATTATGTAGTTTCTGTTGGCCTCAAGCGCTTGTCAGTAC
13 13 1 GT_rheMac2_chr7:43600963-43603518_9 FALSE ens|ENSMMUT00000008815:-235 PDCD7 chr7:43601803-43601862 chr7 NC_007864.1 43601803 43601862 GGTGAGTATCTTCGAGAAGTTGGAGGTTATCCTGAGGAACTGCAGCTGCAGCTGAGATCT
14 14 1 GT_rheMac2_chr9:66854028-66856528_22 FALSE ens|ENSMMUT00000008976:4452 NA chr9:66856108-66856167 chr9 NC_007866.1 66856108 66856167 TAATTAGTAATTCCAGTTAACATTTGGCAAAAAGACCTAGTTGCAGGAGGAAAATGTTTT
15 15 1 GT_rheMac2_chr2:19840476-19842976_24 FALSE ens|ENSMMUT00000004160:131 COL8A1 chr2:19842556-19842615 chr2 NC_007859.1 19842556 19842615 TTTGGTTAGAGCTGATTCTTACGGATGCGCGATCCGCTGCTCCTTTAACTAGCAACTGGT
16 16 1 GT_rheMac2_chr14:10200790-10204597_24 FALSE ens|ENSMMUT00000018148:-5726 DNAJC4 chr14:10204430-10204489 chr14 NC_007871.1 10204430 10204489 ACTCCCACCCACTCTGTCCTCCCAGGTCCCCTCCAAAGGTTGCAACACTTGTCTGAGGCC
17 17 1 GT_rheMac2_chr7:87451605-87454105_15 FALSE ens|ENSMMUT00000006262:-330 CTSG chr7:87452485-87452544 chr7 NC_007864.1 87452485 87452544 ATTCCTGTTTTCTATTCCTCTGGATTTACAGCATCAGTCCTTTTGAATTTCTGGGTTTCT
18 18 1 GT_rheMac2_chr12:21687204-21689704_13 FALSE ens|ENSMMUT00000016299:-1429 UPP2 chr12:21687724-21687783 chr12 NC_007869.1 21687724 21687783 TGGTGGTTCTCCTCATTATACCTTAAAAATAAAATTGAGAGGTATGGCATGGAATATCAA
19 19 1 GT_rheMac2_chr10:33384979-33387479_10 FALSE ens|ENSMMUT00000044646:137361 C20ORF96 chr10:33385539-33385598 chr10 NC_007867.1 33385539 33385598 GTAAAACCACTATGTGACCTGAATAATGGCCATAGGGCTCATCTAAGCCAACTGGCTTCT
20 20 1 GT_rheMac2_chr14:14161984-14164484_5 FALSE ens|ENSMMUT00000031400:-570 STX3 chr14:14163104-14163163 chr14 NC_007871.1 14163104 14163163 TGGGTGACAGTCGAGTGTTCTAAAAATATCCTGCCAGGGGGAAGGCATTCCGAGTAGCGG

Total number of rows: 420288

Table truncated, full table size 87204 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
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Supplementary file Size Download File type/resource
GPL22112_037581_D_GEO_20160701.txt.gz 25.1 Mb (ftp)(http) TXT

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