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Status
Public on Jul 06, 2016
Title
Agilent-037581 rhesus promoter tiling 2011 array (Feature number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Macaca mulatta
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Annotations based on rheMac2:BCMV1:Jan2006 Arrays of this design have barcodes that begin with 16037581 or 2537581. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Jul 05, 2016
Last update date
Jul 19, 2016
Contact name
Moshe Szyf
E-mail(s)
moshe.szyf@mcgill.ca
Organization name
McGill University
Department
Pharmacology
Street address
McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309
City
Montreal
State/province
Quebec
ZIP/Postal code
H3G 1Y6
Country
Canada
Samples (64)
GSM2225713 , GSM2225714 , GSM2225715 , GSM2225716 , GSM2225717 , GSM2225718
GSM2225719 ,
GSM2225720 ,
GSM2225721 ,
GSM2225722 ,
GSM2225723 ,
GSM2225725 ,
GSM2225727 ,
GSM2225728 ,
GSM2225729 ,
GSM2225730 ,
GSM2225820 ,
GSM2225821 ,
GSM2225822 ,
GSM2225823 ,
GSM2225824 ,
GSM2225825 ,
GSM2225826 ,
GSM2225827 ,
GSM2225828 ,
GSM2225829 ,
GSM2225830 ,
GSM2225831 ,
GSM2225832 ,
GSM2225833 ,
GSM2225834 ,
GSM2225835 ,
GSM2225836 ,
GSM2225837 ,
GSM2225838 ,
GSM2225839 ,
GSM2225840 ,
GSM2225841 ,
GSM2225842 ,
GSM2225843 ,
GSM2225844 ,
GSM2225845 ,
GSM2225846 ,
GSM2225847 ,
GSM2225848 ,
GSM2225849 ,
GSM2225850 ,
GSM2225851 ,
GSM2225852 ,
GSM2225853 ,
GSM2225854 ,
GSM2225855 ,
GSM2225856 ,
GSM2225857 ,
GSM2225858 ,
GSM2225859 ,
GSM2225860 ,
GSM2225861 ,
GSM2225862 ,
GSM2225863 ,
GSM2225864 ,
GSM2225865 ,
GSM2225866 ,
GSM2225867
Series (3)
GSE84020
DNA methylation signatures of parental deprivation in peripheral tissues of male rhesus macaques
GSE84024
Early life adversity alters normal sex-dependent developmental dynamics of DNA methylation in rhesus monkeys
GSE84028
Ankyrin-3 as a Molecular Marker of Early Life Stress and Vulnerability to Psychiatric Disorders
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
ENSEMBL_ACC
GenBankAccession
GENE_SYMBOL
Gene Symbol
CHROMOSOMAL_LOCATION
Chromosomal Location
CHROMOSOME
Chromosome
RANGE_GB
RefSeq accession.version
RANGE_START
the start position (relative to the RANGE_GB accession)
RANGE_END
the end position (relative to the RANGE_GB accession)
SEQUENCE
Probe sequence
Data table
ID
COL
ROW
SPOT_ID
CONTROL_TYPE
ENSEMBL_ACC
GENE_SYMBOL
CHROMOSOMAL_LOCATION
CHROMOSOME
RANGE_GB
RANGE_START
RANGE_END
SEQUENCE
1
1
1
DarkCorner
pos
2
2
1
DarkCorner
pos
3
3
1
DarkCorner
pos
4
4
1
GT_rheMac2_chr3:47150357-47152857_4
FALSE
ens|ENSMMUT00000031634:51502
CYP3A43
chr3:47150477-47150536
chr3
NC_007860.1
47150477
47150536
ACCATCATCAGTCCCACCCTCTTGCTCATGAGCACAGCATAGCGCAGTAGATGACAGATG
5
5
1
GT_rheMac2_chr4:41170220-41172720_17
FALSE
ens|ENSMMUT00000005203:-69
NCR2
chr4:41172100-41172159
chr4
NC_007861.1
41172100
41172159
TGCTGGAAGAGCAGCAGAATCAGGCCCAGCTCCCAGTTCCCTCTCCCCAGTCTTCTCCAG
6
6
1
GT_rheMac2_chr8:127114969-127118842_8
FALSE
ens|ENSMMUT00000021719:1439
TATDN1
chr8:127115449-127115508
chr8
NC_007865.1
127115449
127115508
GATTTAGTTGTATAACATAAACACACTTTTAAAAAGTTATGTGGCCTTTCTTTATGGAGG
7
7
1
GT_rheMac2_chr14:65721001-65724757_1
FALSE
ens|ENSMMUT00000010826:1806
FXC1
chr14:65721001-65721060
chr14
NC_007871.1
65721001
65721060
GATGATGGAAAGCTGGAATTAGGAGATTCTAGACAAGCAGTGAAACATTAAGGTAGCATT
8
8
1
GT_rheMac2_chr1:54810617-54813117_15
FALSE
ens|ENSMMUT00000019702:-130
RAB3B
chr1:54811297-54811356
chr1
NC_007858.1
54811297
54811356
ACTCAGAATCACTCCATCACTATACCTGCCCCAAATGTTGTCTCAGCACTGGGGTGGAAC
9
9
1
GT_rheMac2_chr15:38699518-38702018_21
FALSE
ens|ENSMMUT00000017196:-850
TMOD1
chr15:38700918-38700977
chr15
NC_007872.1
38700918
38700977
AACCAGGGTTCACCTCTGCTGCTTCCCAGACTGCTCTCTCTTGCTGGAGAAGCCTACCGT
10
10
1
GT_rheMac2_chr7:123578344-123580844_20
FALSE
ens|ENSMMUT00000028061:-930
NA
chr7:123579824-123579883
chr7
NC_007864.1
123579824
123579883
TCTGCATAGAAGACAAGCATTTTGACATGTCTGAGAACTTTAGCCAGTGGCACCAAAGCT
11
11
1
GT_rheMac2_chr13:108158630-108161130_6
FALSE
ens|ENSMMUT00000033465:-1509
SULT1C4
chr13:108159070-108159129
chr13
NC_007870.1
108159070
108159129
TAACCTCCCCCGTCTCCCAGCCCTCCCCCTCTAGCACACAACGCACTAGTCAAAACTGCT
12
12
1
GT_rheMac2_chr13:86241841-86244341_18
FALSE
ens|ENSMMUT00000025039:-1410
SFTPB
chr13:86243801-86243860
chr13
NC_007870.1
86243801
86243860
CACACTCAAGGTTACCCAAGGATTATGTAGTTTCTGTTGGCCTCAAGCGCTTGTCAGTAC
13
13
1
GT_rheMac2_chr7:43600963-43603518_9
FALSE
ens|ENSMMUT00000008815:-235
PDCD7
chr7:43601803-43601862
chr7
NC_007864.1
43601803
43601862
GGTGAGTATCTTCGAGAAGTTGGAGGTTATCCTGAGGAACTGCAGCTGCAGCTGAGATCT
14
14
1
GT_rheMac2_chr9:66854028-66856528_22
FALSE
ens|ENSMMUT00000008976:4452
NA
chr9:66856108-66856167
chr9
NC_007866.1
66856108
66856167
TAATTAGTAATTCCAGTTAACATTTGGCAAAAAGACCTAGTTGCAGGAGGAAAATGTTTT
15
15
1
GT_rheMac2_chr2:19840476-19842976_24
FALSE
ens|ENSMMUT00000004160:131
COL8A1
chr2:19842556-19842615
chr2
NC_007859.1
19842556
19842615
TTTGGTTAGAGCTGATTCTTACGGATGCGCGATCCGCTGCTCCTTTAACTAGCAACTGGT
16
16
1
GT_rheMac2_chr14:10200790-10204597_24
FALSE
ens|ENSMMUT00000018148:-5726
DNAJC4
chr14:10204430-10204489
chr14
NC_007871.1
10204430
10204489
ACTCCCACCCACTCTGTCCTCCCAGGTCCCCTCCAAAGGTTGCAACACTTGTCTGAGGCC
17
17
1
GT_rheMac2_chr7:87451605-87454105_15
FALSE
ens|ENSMMUT00000006262:-330
CTSG
chr7:87452485-87452544
chr7
NC_007864.1
87452485
87452544
ATTCCTGTTTTCTATTCCTCTGGATTTACAGCATCAGTCCTTTTGAATTTCTGGGTTTCT
18
18
1
GT_rheMac2_chr12:21687204-21689704_13
FALSE
ens|ENSMMUT00000016299:-1429
UPP2
chr12:21687724-21687783
chr12
NC_007869.1
21687724
21687783
TGGTGGTTCTCCTCATTATACCTTAAAAATAAAATTGAGAGGTATGGCATGGAATATCAA
19
19
1
GT_rheMac2_chr10:33384979-33387479_10
FALSE
ens|ENSMMUT00000044646:137361
C20ORF96
chr10:33385539-33385598
chr10
NC_007867.1
33385539
33385598
GTAAAACCACTATGTGACCTGAATAATGGCCATAGGGCTCATCTAAGCCAACTGGCTTCT
20
20
1
GT_rheMac2_chr14:14161984-14164484_5
FALSE
ens|ENSMMUT00000031400:-570
STX3
chr14:14163104-14163163
chr14
NC_007871.1
14163104
14163163
TGGGTGACAGTCGAGTGTTCTAAAAATATCCTGCCAGGGGGAAGGCATTCCGAGTAGCGG
Total number of rows: 420288 Table truncated, full table size 87204 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL22112_037581_D_GEO_20160701.txt.gz
25.1 Mb
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