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GEO help: Mouse over screen elements for information. |
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| Status |
Public on May 17, 2016 |
| Title |
A-UMCU-Y44K-4.0 |
| Technology type |
in situ oligonucleotide |
| Distribution |
non-commercial |
| Organism |
Saccharomyces cerevisiae |
| Manufacturer |
Holstege Lab, UMC Utrecht, The Netherlands |
| Manufacture protocol |
1. Slides are obtained from a commercial provider (Agilent) and reannotated using Blat to obtain the latest gene annotations from Ensembl.
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| Support |
glass |
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| Web link |
http://microarrays.holstegelab.nl
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| Contributor(s) |
van Leenen D, Groot Koerkamp M, Lijnzaad P, Kemmeren P, Holstege F |
| Submission date |
May 11, 2016 |
| Last update date |
May 17, 2016 |
| Contact name |
Marian Groot Koerkamp |
| Organization name |
Princess Maxima Center for Pediatric Oncology
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| Department |
Research
|
| Lab |
Drostlab
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| Street address |
Heidelberglaan 25
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| City |
Utrecht |
| State/province |
Utrecht |
| ZIP/Postal code |
3584 CS |
| Country |
Netherlands |
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| Samples (24)
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GSM2179661, GSM2179662, GSM2179663, GSM2179664, GSM2179665, GSM2179666
GSM2179667, GSM2179668, GSM2179669, GSM2179670, GSM2179671, GSM2179672, GSM2179673, GSM2179674, GSM2179675, GSM2179676, GSM2179677, GSM2179678, GSM2179679, GSM2179680, GSM2179681, GSM2179682, GSM2179683, GSM2179684
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| Series (2) |
| GSE81481 |
HSF1 and MOT1-expression and binding: Molecular mechanisms that distinguish TFIID housekeeping from regulatable SAGA promoters |
| GSE81987 |
Hsf1-ChIP-on-chip: Molecular mechanisms that distinguish TFIID housekeeping from regulatable SAGA promoters |
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| Data table header descriptions |
| ID |
Primary identifier |
| METACOLUMN |
Metagrid column position |
| METAROW |
Metagrid row position |
| COLUMN |
Grid column position |
| ROW |
Grid row position |
| ORF |
Locus tag |
| SPOT_ID |
Alternative spot identifier |
| SUPPLIER_ID |
Original supplier id, e.g., from Agilent or Operon |
| REPORTER_GROUP |
Class the reporter belongs to, e.g., controls or genes |
| SEQUENCE |
Nucleotide sequence |
| SYSTEMATIC_NAME |
Systematic name of the gene |
| GENE_SYMBOL |
Gene symbol for the gene |
| SYNONYMS |
Synonyms for the gene, semicolon separated |
| ORGANISM |
Prganism |
| PRIMARY_DB |
Primay external database identifier, format is <extdb>:<identifier> |
| Data table |
| ID |
METACOLUMN |
METAROW |
COLUMN |
ROW |
ORF |
SPOT_ID |
SUPPLIER_ID |
REPORTER_GROUP |
SEQUENCE |
SYSTEMATIC_NAME |
GENE_SYMBOL |
SYNONYMS |
ORGANISM |
PRIMARY_DB |
| 1 |
1 |
1 |
1 |
1 |
|
--QCAA000454 |
DarkCorner |
qc_control |
|
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|
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| 2 |
1 |
1 |
2 |
1 |
|
--QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 3 |
1 |
1 |
3 |
1 |
|
--QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 4 |
1 |
1 |
4 |
1 |
|
--QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 5 |
1 |
1 |
5 |
1 |
|
--QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 6 |
1 |
1 |
6 |
1 |
|
--QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 7 |
1 |
1 |
7 |
1 |
|
--QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 8 |
1 |
1 |
8 |
1 |
|
--QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 9 |
1 |
1 |
9 |
1 |
|
--QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 10 |
1 |
1 |
10 |
1 |
|
--QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 11 |
1 |
1 |
11 |
1 |
|
--QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
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|
| 12 |
1 |
1 |
12 |
1 |
|
--QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 13 |
1 |
1 |
13 |
1 |
|
--QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 14 |
1 |
1 |
14 |
1 |
|
--QCAA000454 |
DarkCorner |
qc_control |
|
|
|
|
|
|
| 15 |
1 |
1 |
15 |
1 |
|
--QCAA000454 |
DarkCorner |
qc_control |
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| 16 |
1 |
1 |
16 |
1 |
YLR046C |
SCAD041031 |
|
gene |
TTTTAGGGATTTGTTTAGAGTTCGTGGGTTATGTGTTGAAAATAGTCTTTATCAATAGCC |
YLR046C |
YLR046C |
RLA1 |
Saccharomyces cerevisiae |
sgd:YLR046C |
| 17 |
1 |
1 |
17 |
1 |
YJR005W |
SCAD021001 |
|
gene |
CTTTGTATGGATTTATTAAAAGGATGCATCGATCACGAAAATAATCCTGACTTAAGAGAT |
YJR005W |
APL1 |
APL1;YAP80 |
Saccharomyces cerevisiae |
sgd:YJR005W |
| 18 |
1 |
1 |
18 |
1 |
YHR162W |
SCAD025421 |
|
gene |
GCTATATTCTCAGCGGCGCCGACGAAAGCAAAAAGGAAATTACTACGGGCAGATAAACGC |
YHR162W |
YHR162W |
|
Saccharomyces cerevisiae |
sgd:YHR162W |
| 19 |
1 |
1 |
19 |
1 |
YLR313C |
SCAD026946 |
|
gene |
GGGAATTGGTTGAATGTGTGAAGATGGCGAACAGGCAGACTCTTTCACAGGACCTCTCGT |
YLR313C |
SPH1 |
SPH1;YLR312C-B |
Saccharomyces cerevisiae |
sgd:YLR313C |
| 20 |
1 |
1 |
20 |
1 |
YOR217W |
SCAD012014 |
|
gene |
ATTACATTTATTAGGTCTAACATTTGTACCTAATATGTCATTCCAAAATTATGCGTTGCA |
YOR217W |
RFC1 |
CDC44;RFC1 |
Saccharomyces cerevisiae |
sgd:YOR217W |
Total number of rows: 45220
Table truncated, full table size 6933 Kbytes.
| Supplementary data files not provided |
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