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Status
Public on Feb 11, 2016
Title
WT_Rodent_Chip_03
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organisms
Leptospira interrogans ; Campylobacter jejuni ; Francisella tularensis subsp. novicida ; Yersinia enterocolitica ; Yersinia pestis ; Yersinia pseudotuberculosis ; Rickettsia prowazekii ; Rickettsia typhi ; Bartonella quintana ; Staphylococcus aureus ; Mycobacterium avium ; Mycobacterium tuberculosis variant bovis ; Mycobacterium avium subsp. paratuberculosis ; Mycobacterium tuberculosis ; Mycobacterium tuberculosis variant microti ; Toxoplasma gondii ; Cowpox virus ; Streptobacillus moniliformis ; Bartonella henselae ; Mycobacterium canetti ; Escherichia coli O157:H7 ; Salmonella enterica subsp. enterica serovar Typhimurium ; Francisella tularensis subsp. tularensis ; Francisella tularensis subsp. holarctica ; Francisella tularensis subsp. mediasiatica ; Paslahepevirus balayani ; Mammarenavirus choriomeningitidis ; Orthohantavirus puumalaense ; Orthohantavirus seoulense Manufacturer
Alere Technologies GmbH
Manufacture protocol
Oligonucleotides were purchased as 3′-amino-modified oligos from Metabion (Martinsried, Germany) and applied at a final concentration of 10 μM in Spotting Buffer 1 (Quantifoil Micro Tools, Jena, Germany). Arrays were spotted using a Microgrid II spotting machine (BioRobotics Inc., Cambridge, UK) according to the instructions of the manufacturer and assembled into ArrayStrips. Each oligonucleotide probe was replicated two-fold on the array. The average spot size was 80 μm.
Submission date
Feb 10, 2016
Last update date
Feb 11, 2016
Contact name
Tim Giles
E-mail(s)
timothy.giles@nottingham.ac.uk Organization name
University of Nottingham
Street address
College Road
City
Loughborough
ZIP/Postal code
LE12 5RD
Country
United Kingdom
Samples (69)
GSM2058778 , GSM2058779 , GSM2058780 , GSM2058781 , GSM2058782 , GSM2058783
GSM2058784 ,
GSM2058785 ,
GSM2058786 ,
GSM2058787 ,
GSM2058788 ,
GSM2058789 ,
GSM2058790 ,
GSM2058791 ,
GSM2058792 ,
GSM2058793 ,
GSM2058794 ,
GSM2058795 ,
GSM2058796 ,
GSM2058797 ,
GSM2058798 ,
GSM2058799 ,
GSM2058800 ,
GSM2058801 ,
GSM2058802 ,
GSM2058803 ,
GSM2058804 ,
GSM2058805 ,
GSM2058806 ,
GSM2058807 ,
GSM2058808 ,
GSM2058809 ,
GSM2058810 ,
GSM2058811 ,
GSM2058812 ,
GSM2058813 ,
GSM2058814 ,
GSM2058815 ,
GSM2058816 ,
GSM2058817 ,
GSM2058818 ,
GSM2058819 ,
GSM2058820 ,
GSM2058821 ,
GSM2058822 ,
GSM2058823 ,
GSM2058824 ,
GSM2058825 ,
GSM2058826 ,
GSM2058827 ,
GSM2058828 ,
GSM2058829 ,
GSM2058830 ,
GSM2058831 ,
GSM2058832 ,
GSM2058833 ,
GSM2058834 ,
GSM2058835 ,
GSM2058836 ,
GSM2058837 ,
GSM2058838 ,
GSM2058839 ,
GSM2058840 ,
GSM2058841 ,
GSM2058842 ,
GSM8258455 ,
GSM8258456 ,
GSM8258457 ,
GSM8258458 Series (2)
GSE77765 Detection of a Yersinia pestis homologue in rodent samples
GSE267014 Spermine-induced DNA methylation change in human macrophages
Data table header descriptions ID Spot ID Spot IDs in raw txt file
Probe name Probe name
SEQUENCE Probe sequence (5'-3')
Probe location Coordinate of probe on array
GB_ACC GenBank Accession number
Data table ID Spot ID Probe name SEQUENCE Probe location GB_ACC 1
3
Mycobacterium_02
TGAGCCCGCGGCCTATCAGCTTGTTGGTGGGGTGACGGCCTACCAAGGCGACGACGGG
1_C
CP010340.1 2
4
Mycobacterium_03
TGGTGGGGACTCGTGAGAGACTGCCGGGGTCAACTCGGAGGAAGGTGGGGATGACGTCA
1_D
CP010340.1 3
5
M. tuberc+bovis_21
CGGCAATGGTGGCAGCGTCGAGCACACTGGCGCTACCGGCTCCTCTGCGAGCGGCGGCA
1_E
CP010340.1 4
6
M. tuberc+bovis_22
GACGGCGGCAACGCCTCCACGAGTGGGGGCATCGGGATCGCGCAAACCGGGGGCG
1_F
CP010340.1 5
7
M. tuberc+bovis_84
TCGTTGTGAACAAGGCTGTGTCCTCGGCGCAAGCCCGTATCGCGGCACGTAAGGCACG
1_G
CP010340.1 6
8
M. tuberc+bovis_86
GCGGTTCTGCAAAAAGCGGTCGCGATTCGATGTTCCAGGCGATACTTCCGCTGCGCGG
1_H
CP010340.1 7
9
M. tuberc+bovis_90
GCAAGCCCGTATCGCGGCACGTAAGGCACGAGAGTTGGTGCGGCGTAAGAGCGCCACC
1_I
CP010340.1 8
10
M. tuberc+bovis_96
CGCAGTTCGAGGGCCAGACCAAGACCAAGTTGGGCAACACCGAGGTCAAATCGTTTGTGC
1_J
CP010340.1 9
11
M. tuberc+bovis_98
AGGGCACCGGGCACGAGGTGGAGATCGCGATGCAATGGAACGCCGGGTATTCGGAGT
1_K
CP010340.1 10
12
M. bovis_12
TGCAGAAGGTCTGTAATGAACAGCTGACCCACTGGTTTGAAGCCAACCCCACCGACTCGA
1_L
CP010332.1 11
13
M. bovis_03
TGGCTGGGCTTCGGCGGGGCCGGGGGCATCGGCGGAATCGGCGGTAACGCTAACGGGGG
1_M
CP010332.1 12
14
M. avium_04
GCACGGCACCTCCACCCGCAAAGTCGACGATTTGGTCAAAGCCCTCGGCGCGGAC
1_N
CP010114.1 13
15
M. avium_05
GTGTTCCTCGACGCCACTTACTGCAAGGCTCGGGTCAACCATCGGGTGGTCTCCCAAGCG
1_O
CP010114.1 14
16
M. avium_08
CTTCGACGTCGGTGACTCCGAGGACGGCGCGTTTTGGACGGCGTTTCTGCGCTCACTGA
1_P
CP010114.1 15
17
M. avium_24
GATCTGGAGCACCAACCCCCTCGAACGACTCAACAAGGAGATCAAACGCCGCACCGACG
1_Q
CP009614.1 16
18
M. paraTB_48
TCGAGCAGCTTGACTCAGATGCGGTGGATGGACCTGGAAGCGAACTGCTTGAGAAGGGC
1_R
CP010114.1 17
19
M. paraTB_49
CGGGCTCGCCGTGATGTTGTTGCAAGCGTCCGTGATGGTCGAGCAGCTTGACTCAGATGC
1_S
CP010114.1 18
20
M. paraTB_50
CGGTGGATCGTCTCGCTAACGGGCCGCAACGTGTGGTTGAGCGTCTCACCTGCTGAACCA
1_T
CP010114.1 19
21
M. paraTB_51
GGAGGCGACGCGGAGGGCCAGAGCGTCGCTCTTGGTGATGAATATCCGAAGCGGTGTGGG
1_U
CP010114.1 20
22
M. microti_01
GCGCGCCAGCGGTAACGCGTGGGATGTGTTTCCGTCCCTCTCGGGGTTTTGGGTC
1_V
DQ217928.1
654 63 Kbytes .Supplementary data files not provided
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