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Platform GPL2089 Query DataSets for GPL2089
Status Public on Jun 29, 2005
Title Human tiling array using Nimblegen platform, set 38 of 38
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
 
Description High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16. There are a total of 38 arrays. This is set 38.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab
 
Web link http://www.nimblegen.com/
Contributor(s) Kim TH, Barrera LO, Zhang M, Qu C, Singer MA, Richmond TA, Wu Y, Green RD, Ren B
Submission date May 17, 2005
Last update date Oct 27, 2010
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Samples (1) GSM51735
Series (1)
GSE2672 A high-resolution map of active promoters in the human genome

Data table header descriptions
ID
Probe ID probe id
Chromosome chromosome
Position position
SEQUENCE probe sequence
Comment comment

Data table
ID Probe ID Chromosome Position SEQUENCE Comment
1 CHRXP081598725 CHRX 81598725 AAAGCACTGTTTAGGAGGGTCCAAAATGCAAACTGAAATTGGTCACCATG SET38
2 CHRXP081599158 CHRX 81599158 GCTAATTATTCTTATTATTAACCCCCAAATCTTGTAATAGAATGAATGCA SET38
3 CHRXP081599258 CHRX 81599258 AATTTTCACCTTGGAAAAAATTGAACTCAGAATCTGAATGATCCTACTTC SET38
4 CHRXP081599358 CHRX 81599358 ATCACAGGTGTGATTTATAAGAAATGTTGACATTTTGTTCCAATGATTAT SET38
5 CHRXP081599458 CHRX 81599458 TAATAAAACATGACTTTTCATGGTTTTAGTTATTAGTAAAATAAGACTTT SET38
6 CHRXP081599558 CHRX 81599558 AAGATTAAGAACAGAGAGAATTTCACACATAATTTATGTACTCATGCCAA SET38
7 CHRXP081599675 CHRX 81599675 GGACTGAATAATCTCACAGTACATAGAAGTATAGTAATGCCAAACTTAAA SET38
8 CHRXP081599775 CHRX 81599775 TTGTATATATAAGTCTCAATTCTTCATTAGTAGTAAGCAATACGTAGCAA SET38
9 CHRXP081599875 CHRX 81599875 TGTTAAGATGCTAATAAATTAATTCATCAAAATAATGTATTGTTAAAAAC SET38
10 CHRXP081599975 CHRX 81599975 ATAGAATTGATTTTATCTAATCTATTTTGTAGCTTTATTTGTAATTTGTG SET38
11 CHRXP081600140 CHRX 81600140 CATGTGGGAGTAGATAATATTTTTTTGAAGGGTAATATTTTTCAAATTTG SET38
12 CHRXP081601118 CHRX 81601118 ATTGCTAGATTAGCTATCATATCCATGCCATTAAATAAATAATACTCAAT SET38
13 CHRXP081601218 CHRX 81601218 TATGCTAATCTTTATATTCACTCTATAGAGCTGTAATTTGGGACTTCCTT SET38
14 CHRXP081601760 CHRX 81601760 CATGCAGTACTTAAATATACAGAAAATATATAGTATTCTCTCTATATATA SET38
15 CHRXP081602463 CHRX 81602463 AAGAAAAGAAAGAAAGAAAGAAAACTCCACTTATCATACTTACCATATAA SET38
16 CHRXP081603060 CHRX 81603060 CTAAACTTCATCTGACCTGTAACAGGGTTTGGGACAAACTTCACAATGTT SET38
17 CHRXP081603160 CHRX 81603160 AAGGAAACCTACATATACAAGAGAAGAAGAGGTGTGAGACCACTTTATTC SET38
18 CHRXP081603260 CHRX 81603260 GATCTATGACCCTGTAAAAGATGATCATTCTCCTGTAATTCTACTGATTT SET38
19 CHRXP081603360 CHRX 81603360 GCCGACATGAGACTGTCTAGATTTCATGGGCTATATGTATAGAAAAATTT SET38
20 CHRXP081603460 CHRX 81603460 CCTATTTGGTAGAGGAAAGCATGGGTCTAATGACAAACTGAATGGATGCA SET38

Total number of rows: 389098

Table truncated, full table size 35440 Kbytes.




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Supplementary data files not provided
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