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Platform GPL19553 Query DataSets for GPL19553
Status Public on Jan 26, 2015
Title Agilent-042708 Eohaustorius estuarius EE_Microarray_DV (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Eohaustorius estuarius
Manufacturer Agilent Technologies
Manufacture protocol See manufacturer's web site at http://www.agilent.com/.
 
Description AMPHIPODS

Arrays of this design have barcodes that begin with 16042708 or 2542708.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Dec 12, 2014
Last update date Jan 26, 2015
Contact name Alvine C Mehinto
Organization name Southern California Coastal Water Research Project
Lab Center for Envirom & Human Toxicol
Street address 3535 Harbor Blvd, Suite 110
City Costa Mesa
ZIP/Postal code 92626
Country USA
 
Relations
Alternative to GPL19554

Data table header descriptions
ID Agilent Feature Number
COL Column
ROW Row
NAME Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession string
CHROMOSOMAL_LOCATION Chromosomal location
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 CUST_502_PI425439771 CUST_502_PI425439771 FALSE eohaus_trim.v2-contig_1849 unmapped ---NA--- TCTTCTTTAATCAGGCAACAAAAGGAAGCATTAAATTATTGTTGCCCGCTGTGTACTGCT
5 96 156 CUST_1149_PI425439771 CUST_1149_PI425439771 FALSE eohaus_trim.v2-contig_6367 unmapped ---NA--- ATCATGGGTTAATCGCGAATTTTCCGTGAGGAACAAATTGCAATCCAGAGCTGGTGATGG
6 96 154 CUST_672_PI425439771 CUST_672_PI425439771 FALSE eohaus_trim.v2-contig_3444 unmapped ---NA--- TAGGTGATGTGCACTGCCAAAAAATAAATCCTTCAAACACTCAATCCTGCCACGCTCCAG
7 96 152 CUST_3213_PI425439380 CUST_3213_PI425439380 FALSE eohaus_trim.v2-contig_4859 unmapped cyclin d-type binding-protein 1 AATTTGACGGCTTTAACAATATTGAGAGCTGGCTTGAGTCTCTCTTTGTCCAGCTCCGTC
8 96 150 CUST_4694_PI425439775 CUST_4694_PI425439775 FALSE eohaus_trim.v2-contig_4861 unmapped ---NA--- ATAATTTAGTGTACAGCTGATACTCTCCGGTAGGCGTCAACGAGAGGCCAGTAATTATGA
9 96 148 CUST_444_PI425439775 CUST_444_PI425439775 FALSE eohaus_trim.v2-contig_4073 unmapped ---NA--- CTGGGTTTAAGGCTTTTCTTATTATATTCGAGGAAACAATCACTCGAATAGAAAACAGTG
10 96 146 CUST_2832_PI425439380 CUST_2832_PI425439380 FALSE eohaus_trim.v2-contig_3030 unmapped molybdenum cofactor synthesis protein 3 TGAGAGTCTTAATCTTATTGCACAAAAGTTGAAGGAAAAGAATAGTTGCGAGCTGATTTG
11 96 144 CUST_109_PI425439380 CUST_109_PI425439380 FALSE eohaus_trim.v2-contig_380 unmapped zgc:101788 protein AATACATGCAAATTATAACTCCAAAACCGACGACAACGACATCGCTCTGCTGCGAGTGTC
12 96 142 CUST_3192_PI425439775 CUST_3192_PI425439775 FALSE eohaus_trim.v2-contig_6158 unmapped ---NA--- TTTGTGTCGAAATTCACAACCAGAACCACCAAGAATTCATCATTTTGAAGCTGAACTCCA
13 96 140 CUST_456_PI425439380 CUST_456_PI425439380 FALSE eohaus_trim.v2-contig_4734 unmapped u1 small nuclear ribonucleoprotein 70 kda CTGAAGTATCATAATTTATTCTAGCGACAAAGAGAGTCTTGTATGGGTCGGTGGTAGCAT
14 96 138 CUST_4954_PI425439380 CUST_4954_PI425439380 FALSE eohaus_trim.v2-contig_1654 unmapped protein disulfide-isomerase a6 precursor TATATCCTACGGGAGAGGAAGAACCTCACCAGTGAAAGGAGGTGAATTACCAAAGATTTT
15 96 136 CUST_1904_PI425439775 CUST_1904_PI425439775 FALSE eohaus_trim.v2-contig_5936 unmapped ---NA--- GTTATTTGGACGCGTGCGAACTGGGTTTTAGTCCGTACAGATCGAATAATGCACATTACA
16 96 134 CUST_7013_PI425439380 CUST_7013_PI425439380 FALSE eohaus_trim.v2-contig_1564 unmapped juvenile hormone esterase TGTCGACAACTTTCCGATGTCCTTTATGTCCAACTTATCTCTGGCAAAAACTTGGGTGGG
17 96 132 CUST_4432_PI425439775 CUST_4432_PI425439775 FALSE eohaus_trim.v2-contig_5994 unmapped ---NA--- CTTTTCAGCTGTCTACAGATAAACATCAACATCGTCTGAAGAGAACTATGAGACCGCCCT
18 96 130 CUST_1550_PI425439771 CUST_1550_PI425439771 FALSE eohaus_trim.v2-contig_5823 unmapped ---NA--- GCCAACTAAGGGATCTCATCCTTAAATTTGCTAACTGAATTTATTTGCTGCTAAAAGTCA
19 96 128 CUST_5080_PI425439380 CUST_5080_PI425439380 FALSE eohaus_trim.v2-contig_7169 unmapped brain protein 16 GGAAAGAAGAGGAAATTGGTGTCGATGATCTAAGTGCATTAGAAGTACCAAAAGATTTAC
20 96 126 CUST_6481_PI425439380 CUST_6481_PI425439380 FALSE eohaus_trim.v2-contig_3723 unmapped conserved hypothetical protein [Ixodes scapularis] TGGATTTTGTACAGGCCGATATTTACTTCGAGTACACAGTCCATGAGGGGAACTCTTTGG

Total number of rows: 15744

Table truncated, full table size 2636 Kbytes.




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