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Platform GPL18188 Query DataSets for GPL18188
Status Public on Sep 01, 2014
Title Agilent-029660 eohaus_mod_44k_v3 array (Probe name version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Eohaustorius estuarius
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16029660 or 2529660.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Probe Names.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jan 19, 2014
Last update date Sep 01, 2014
Contact name Paula Jackman
E-mail(s) paula.jackman@ec.gc.ca
Organization name Environment Canada
Street address 443 University ave
City Moncton
State/province NB
ZIP/Postal code e1a 3e9
Country Canada
 
Samples (37) GSM1310318, GSM1310319, GSM1310320, GSM1310321, GSM1310322, GSM1310323 
Series (3)
GSE54214 Toxicogenomics of Eohaustorius estuarius following pyrethroid and ammonia exposure
GSE64206 Ecotoxicogenomics: interlaboratory comparability of microarray data [LabC_Ex]
GSE64213 Ecotoxicogenomics: interlaboratory comparability of microarray data

Data table header descriptions
ID Agilent Probe Names
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
CUST_1000_PI425439380 CUST_1000_PI425439380 FALSE eohaus_trim.v2-contig_1369 unmapped succinate dehydrogenase;SL 1897;Hits20;Min eVal 0; Number GO 7;2_BC;Xhyb_0 CAGAATCTGCTCATCAACGCCAACCAGACGATCGTAGGAGCAGAGGCGAGGAAGGAGAGT
CUST_1000_PI425439771 CUST_1000_PI425439771 FALSE eohaus_trim.v2-contig_7389 unmapped ---NA---;SL 357;Hits0;Min eVal ; Number GO 0;1_BC;Xhyb_0 CGCAAACTGTTCATTATGGAACTTCTGCTAGACATTCCTAATCATTACTAGTTTCACAAT
CUST_1000_PI425439775 CUST_1000_PI425439775 FALSE eohaus_trim.v2-contig_6670 unmapped conserved hypothetical protein [Capnocytophaga ochracea F0287];SL 452;Hits1;Min eVal 0.196999; Number GO 0;1_BC;Xhyb_0 TATACGGAGCAAAAGCATGAAGGCAGCTTACAAAAAGTATCAAATGTGAGAGGATGATCA
CUST_1001_PI425439380 CUST_1001_PI425439380 FALSE eohaus_trim.v2-contig_1583 unmapped succinate dehydrogenase complex subunit b;SL 478;Hits20;Min eVal 5.96866E-51; Number GO 12;2_BC;Xhyb_0 AAGAAGAAGACGAAGGTGTACCCGCTGCCGCACATGTACGTGGTCAAGGATCTGGTGCCT
CUST_1001_PI425439771 CUST_1001_PI425439771 FALSE eohaus_trim.v2-contig_7433 unmapped ---NA---;SL 357;Hits0;Min eVal ; Number GO 0;1_BC;Xhyb_0 GGGCCCATAACCCATCTATGACATTTGTCTCTTTTAAGTTTTTATGGTGTAAAAAACACT
CUST_1001_PI425439775 CUST_1001_PI425439775 FALSE eohaus_trim.v2-contig_1720 unmapped ---NA---;SL 453;Hits0;Min eVal ; Number GO 0;1_BC;Xhyb_0 TTTACCTCTGTAATACATCCCAGCATTTCGTATGCATTTACTCTGCAATGTGTATATATG
CUST_1002_PI425439380 CUST_1002_PI425439380 FALSE eohaus_trim.v2-contig_1583 unmapped succinate dehydrogenase complex subunit b;SL 478;Hits20;Min eVal 5.96866E-51; Number GO 12;2_BC;Xhyb_0 AAAGAAGAAGACGAAGGTGTACCCGCTGCCGCACATGTACGTGGTCAAGGATCTGGTGCC
CUST_1002_PI425439771 CUST_1002_PI425439771 FALSE eohaus_trim.v2-contig_7491 unmapped ---NA---;SL 357;Hits0;Min eVal ; Number GO 0;1_BC;Xhyb_0 TATAAGGTTAAAGTCAATCTGAACGATTGGCTTGAGGAGGACATACCCGAACCATTGGCT
CUST_1002_PI425439775 CUST_1002_PI425439775 FALSE eohaus_trim.v2-contig_1720 unmapped ---NA---;SL 453;Hits0;Min eVal ; Number GO 0;1_BC;Xhyb_0 GAAAAATTTACCTCTGTAATACATCCCAGCATTTCGTATGCATTTACTCTGCAATGTGTA
CUST_1003_PI425439380 CUST_1003_PI425439380 FALSE eohaus_trim.v2-contig_4419 unmapped subtilisin-like protease 2;SL 603;Hits8;Min eVal 0.00000591776; Number GO 3;2_BC;Xhyb_0 ATCGGAAGAGAAGCAAATCTATTGAAAAAAGGAAAAGCAAGTCTAAAGAAAGAAAACGAA
CUST_1003_PI425439771 CUST_1003_PI425439771 FALSE eohaus_trim.v2-contig_7636 unmapped cyclic nucleotide-binding domain containing protein;SL 357;Hits2;Min eVal 0.256422; Number GO 3;1_BC;Xhyb_0 TCTGAAACTCCTGAACACGAAAATAATGAAAGCGGCGAATTCAGCGAAAAGGTTAGCCCG
CUST_1003_PI425439775 CUST_1003_PI425439775 FALSE eohaus_trim.v2-contig_2062 unmapped ---NA---;SL 453;Hits0;Min eVal ; Number GO 0;1_BC;Xhyb_0 CGCAGGAAGTCCTCCAGGGGTACATAAATGGATCGCAAAAAGTATTTTAACATAAATTTG
CUST_1004_PI425439380 CUST_1004_PI425439380 FALSE eohaus_trim.v2-contig_4419 unmapped subtilisin-like protease 2;SL 603;Hits8;Min eVal 0.00000591776; Number GO 3;2_BC;Xhyb_0 GATCGGAAGAGAAGCAAATCTATTGAAAAAAGGAAAAGCAAGTCTAAAGAAAGAAAACGA
CUST_1004_PI425439771 CUST_1004_PI425439771 FALSE eohaus_trim.v2-contig_7760 unmapped ---NA---;SL 357;Hits0;Min eVal ; Number GO 0;1_BC;Xhyb_0 TGATGGTTTTCAGAACAATGATGGTTCAGAACACAATGTGGATCCGGAGGATCCTAACCG
CUST_1004_PI425439775 CUST_1004_PI425439775 FALSE eohaus_trim.v2-contig_2062 unmapped ---NA---;SL 453;Hits0;Min eVal ; Number GO 0;1_BC;Xhyb_0 GAAAATGTGTTGTAAATACTCGAACATCCGGACAGCGGCAATACAATTCAGGTTCGCAGG
CUST_1005_PI425439380 CUST_1005_PI425439380 FALSE eohaus_trim.v2-contig_2740 unmapped subfamily member 9;SL 766;Hits20;Min eVal 3.51201E-51; Number GO 3;1_BC;Xhyb_0 GGACTGGGTGAAGTATTGGCGGACACTGTTTTCGAAGATTACGCTGCAGGACATAAAAAA
CUST_1005_PI425439771 CUST_1005_PI425439771 FALSE eohaus_trim.v2-contig_7797 unmapped ---NA---;SL 357;Hits0;Min eVal ; Number GO 0;1_BC;Xhyb_0 GTCTTGCTGTATCTGCTGTACATAAGAGACTACTACTACTATTGATCATGTATAGTACAT
CUST_1005_PI425439775 CUST_1005_PI425439775 FALSE eohaus_trim.v2-contig_2075 unmapped ---NA---;SL 453;Hits0;Min eVal ; Number GO 0;1_BC;Xhyb_0 TCAGAGCAATTCCCATTGTTTGTATACAATTTTGTTTGTATACTACAGCCATTTTCCCCC
CUST_1006_PI425439380 CUST_1006_PI425439380 FALSE eohaus_trim.v2-contig_2740 unmapped subfamily member 9;SL 766;Hits20;Min eVal 3.51201E-51; Number GO 3;1_BC;Xhyb_0 ACACACAGAACATCAACACGGACTGGGTGAAGTATTGGCGGACACTGTTTTCGAAGATTA
CUST_1006_PI425439771 CUST_1006_PI425439771 FALSE eohaus_trim.v2-contig_7873 unmapped ---NA---;SL 357;Hits0;Min eVal ; Number GO 0;1_BC;Xhyb_0 TATTTTGAAGAGTTACTGAATGTCAGGATAGATAAGGAAGCGAATATTGCAGCAGGGGGG

Total number of rows: 14783

Table truncated, full table size 3264 Kbytes.




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Supplementary file Size Download File type/resource
GPL18188_029660_D_GEO_20110517.txt.gz 2.5 Mb (ftp)(http) TXT

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