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Status
Public on Nov 15, 2013
Title
Lawrence Livermore Microbial Detection Array version 2e
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
synthetic construct Manufacturer
NimbleGen
Manufacture protocol
see manufacturer's web site www.nimblegen.com
Description
Array design is described in Gardner S, Jaing CJ, McLoughlin KS, Slezak TR, 'A Microbial Detection Array (MDA) for Viral and Bacterial Detection', submitted to BMC Genomics, 2010.
Submission date
Nov 13, 2013
Last update date
Nov 15, 2013
Contact name
Kevin McLoughlin
E-mail(s)
mcloughlin2@llnl.gov Phone
(925)423-5486
Organization name
Lawrence Livermore National Laboratory
Department
Global Security
Lab
Pathogen Bioinformatics
Street address
PO Box 808
City
Livermore
State/province
CA
ZIP/Postal code
94551
Country
USA
Samples (42)
GSM1263118 , GSM1263119 , GSM1263120 , GSM1263121 , GSM1263122 , GSM1263123
GSM1263124 ,
GSM1263125 ,
GSM1263126 ,
GSM1263127 ,
GSM1263128 ,
GSM1263129 ,
GSM1263130 ,
GSM1263131 ,
GSM1263132 ,
GSM1263133 ,
GSM1263134 ,
GSM1263135 ,
GSM1263136 ,
GSM1263137 ,
GSM1263138 ,
GSM1263139 ,
GSM1263140 ,
GSM1263141 ,
GSM1263142 ,
GSM1263143 ,
GSM1263144 ,
GSM1263145 ,
GSM1263146 ,
GSM1263147 ,
GSM1263148 ,
GSM1263149 ,
GSM1263150 ,
GSM1263151 ,
GSM1263152 ,
GSM1263153 ,
GSM1263154 ,
GSM1263155 ,
GSM1263156 ,
GSM1263157 ,
GSM1263158 ,
GSM1263159 Series (1)
GSE52324 The Microbial Detection Array for Detection of Emerging Viruses in Clinical Samples - A Useful Panmicrobial Diagnostic Tool
Data table header descriptions ID Probe identifier
PROBE_TYPE Type of probe: RANDOM for random negative control probes, TARGET for bacterial/viral targets
SEQUENCE Sequence of oligo
Data table ID PROBE_TYPE SEQUENCE MDAv2_388K_000001
TARGET
GCTGGGCCTACGCCCGGCTACACCCGCCCCTGCACCACGCGCATCTACCAGGTCCTGCCG
MDAv2_388K_000002
TARGET
TGGACAGGCTGGACGGATGACATTTTATTGGACAATAGTCAAACCAGGAGAGTCAATAAC
MDAv2_388K_000004
TARGET
AAAAATTCAGACTTCCAAATTAAGTGGTCTCCCCCTGAGAGGACTGCTCTAACGAGCGTATTCCAGTCAG
MDAv2_388K_000006
TARGET
GGGAGAATTCAGGACCTCGAGAAATACGTTGAAGACACTAAAATAGATCTCTGGTCTTAC
MDAv2_388K_000013
TARGET
CCAATCCAAGGGTTGGGGCTCATTGTCCAAAGCACAGAAAGCCACTGCTCGCTCGTACGG
MDAv2_388K_000015
TARGET
CGACGCTCAACAGATTTTGAGTTTGACCCACATTCGAACTTTTATCATTTCACCCGTCCT
MDAv2_388K_000017
TARGET
TATGACGCTGGCTGCGGCGAATTTGAATATCGGAAACATATCTCCAGACTACATACAAAA
MDAv2_388K_000020
TARGET
TACCAGTCTGCGAAGTGCTCTCCGACCGGCCCCACGTTCACCACGCCCTCGGCTTTCGAC
MDAv2_388K_000021
TARGET
TAAGGGTGCATGAGGGATATGAAGAATTCACAATGGTTGGGAGAAGAGCAACAGCTATTC
MDAv2_388K_000023
TARGET
CGCGGCGGTCTTTCCGTCTCTCGAAAAGCGCAGATGCAGCATGCTGGAACCGGTGAAGAA
MDAv2_388K_000024
TARGET
GGCCCAGCCCGGGTCGGCGGGGCCCCCCAGTCCGCGGCTCTGCCGCGGACTGGGGAGGCA
MDAv2_388K_000025
TARGET
CTACTCAACTGGTGCACTTGCCAGTTGCATGGGCCTCATATACAACAGAATGGGGACAGT
MDAv2_388K_000026
TARGET
GCTTTAAAGAAATGGGGATAACTCCATATCGTGTGATGGAGTGGCTTGATGAGTACATGCC
MDAv2_388K_000028
TARGET
CTTCTCATTGTTCAGGCACTTAGGGACAACCTGGAACCTGGAACCTTCGATCTTGGGGGG
MDAv2_388K_000030
TARGET
CTTGAGAGGTGCGTGATTTCTTATGGGATCATGTCTTTTAAAATCTTTGCCGTTTCGGGG
MDAv2_388K_000035
TARGET
AAACCGCTGGATGTGGCTCGCCGTCAACCTCTGCACCGCCTTCCTCGCCAGCCGCGTCAT
MDAv2_388K_000038
TARGET
GGCCAACAGACTTGGGACAATGTGGGCTCCTAGGAACCCTAATAGGACCTCCCCAATGTG
MDAv2_388K_000040
TARGET
AATGGTCAGTGCTCCACCCTTCATAATTAACGCAACTGACGCTATGATGTTGGAGTCTTG
MDAv2_388K_000041
TARGET
CTGTGATGAGATTTACTGGGGAAGCAGGCACTTTTCTGTTTAATACCCTTGCAAATATGGTTTTCACGTT
MDAv2_388K_000044
TARGET
GCAGGACACACCCGACAATTTGCGCATAGTTACTTCTGAGTTGGCTCCTGGCTTCCTGCT
110611 9380 Kbytes .Supplementary file Size Download File type/resource GPL17919_MDAv2e.ndf.gz
8.0 Mb
(ftp) (http) NDF
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