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Platform GPL17851 Query DataSets for GPL17851
Status Public on May 01, 2014
Title Agilent-042279 Enchytraeus crypticus_v1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Enchytraeus crypticus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Enchytraeus crypticus' microarray 4x180K_v1_20120720

Arrays of this design have barcodes that begin with 16042279 or 2542279.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Oct 29, 2013
Last update date May 01, 2014
Contact name Tjalf de Boer
E-mail(s) tjalf.deboer@microlifesolutions.nl
Organization name MicroLife Solutions
Street address Science Park 406
City Amsterdam
ZIP/Postal code 1098 XH
Country Netherlands
 
Samples (80) GSM1253520, GSM1253521, GSM1253522, GSM1253523, GSM1253524, GSM1253525 
Series (3)
GSE51838 Transcriptome assembly and microarray construction for Enchytraeus crypticus, a model oligochaete to assess stress response mechanisms derived from soil conditions
GSE74114 Mechanisms of phenanthrene toxicity in the soil invertebrate Enchytraeus crypticus
GSE183377 Molecular mechanisms of zinc toxicity in the potworm Enchytraeus crypticus, analysed by high-throughput gene expression profiling

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence
SPOT_ID Spot identifier

Data table
ID COL ROW NAME CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE SPOT_ID
1 532 340 GE_BrightCorner pos --GE_BrightCorner
2 532 338 DarkCorner pos --DarkCorner
3 532 336 DarkCorner pos --DarkCorner
4 532 334 DarkCorner pos --DarkCorner
5 532 332 DarkCorner pos --DarkCorner
6 532 330 DarkCorner pos --DarkCorner
7 532 328 DarkCorner pos --DarkCorner
8 532 326 DarkCorner pos --DarkCorner
9 532 324 DarkCorner pos --DarkCorner
10 532 322 DarkCorner pos --DarkCorner
11 532 320 DarkCorner pos --DarkCorner
12 532 318 DarkCorner pos --DarkCorner
13 532 316 DarkCorner pos --DarkCorner
14 532 314 DarkCorner pos --DarkCorner
15 532 312 DarkCorner pos --DarkCorner
16 532 310 DarkCorner pos --DarkCorner
17 532 308 DarkCorner pos --DarkCorner
18 532 306 DarkCorner pos --DarkCorner
19 532 304 DarkCorner pos --DarkCorner
20 532 302 DarkCorner pos --DarkCorner

Total number of rows: 180880

Table truncated, full table size 20827 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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