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Platform GPL17599 Query DataSets for GPL17599
Status Public on Aug 21, 2013
Title Yersinia intermedia ATCC 29909 384k array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Yersinia intermedia ATCC 29909
Manufacturer NimbleGen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description NimbleGen design name Yersinia intermedia ATCC 29909, NimbleGen design ID OID 30956. A whole-genome-tiled array design with ~320,000 probes representing 3953 genes that included 3887 protein coding genes (and 18 likely pseudogenes), 12 non-coding RNAs and 36 tRNAs. The design includes random GC and other control probes.
Yin29909_overlap_DF
 
Submission date Aug 20, 2013
Last update date Aug 21, 2013
Contact name Lavanya Babujee
E-mail(s) babujee@wisc.edu
Phone 608-770-5803
Organization name UW-Madison
Department Genetics
Street address 425 Henry Mall
City Madison
State/province WI
ZIP/Postal code 53705
Country USA
 
Samples (6) GSM1213115, GSM1213116, GSM1213117, GSM1213118, GSM1213119, GSM1213120
Series (1)
GSE50043 Expression analysis of Yersinia intermedia strain ATCC 29909 at 28 C in minimal medium with glucose under aerobic and anaerobic conditions

Data table header descriptions
ID
SEQUENCE
SPOT_ID

Data table
ID SEQUENCE SPOT_ID
YIN_F000000 AGCCTCCCTCCGTTTTTTAGTGCTACTGCCCGTGCGCTGCCAAATATTGCACTTT YIN_F000000
YIN_R000001 AAAGTGCAATATTTGGCAGCGCACGGGCAGTAGCACTAAAA YIN_R000001
YIN_F000002 GTGCGCTGCCAAATATTGCACTTTTGGCAGCGTTCGGAACAGATACATGATGAGTATTTTTGCGC YIN_F000002
YIN_R000003 GCGCAAAAATACTCATCATGTATCTGTTCCGAACGCTGCCAAAAGTGCAA YIN_R000003
YIN_F000004 CAGCGTTCGGAACAGATACATGATGAGTATTTTTGCGCTAATACTTTGCA YIN_F000004
YIN_R000005 TGGTTTGATGCAAAGTATTAGCGCAAAAATACTCATCATGTATCTG YIN_R000005
YIN_F000006 TTTTTGCGCTAATACTTTGCATCAAACCAAAGTATTTCATCGGATCT YIN_F000006
YIN_R000007 GGTTGCGCCATAAAGATCCGATGAAATACTTTGGTTTGATGCAAAGT YIN_R000007
YIN_F000008 ACCAAAGTATTTCATCGGATCTTTATGGCGCAACCACGTTAACAATATTT YIN_F000008
YIN_R000009 AAAAATATTGTTAACGTGGTTGCGCCATAAAGATCCGATG YIN_R000009
YIN_F000010 GGCGCAACCACGTTAACAATATTTTTATTATTTCCATTGTAAGTGGAGTCATCATGAG YIN_F000010
YIN_R000011 ACTCATGATGACTCCACTTACAATGGAAATAATAAAAATATTGT YIN_R000011
YIN_F000012 TCCATTGTAAGTGGAGTCATCATGAGTATTAAAAATAACAAAAAGTAGTCA YIN_F000012
YIN_R000013 GGATGCTGCCATAAAAAACATGACTACTTTTTGTTATTTTTAATACTCATGATGACTCC YIN_R000013
YIN_F000014 ATAACAAAAAGTAGTCATGTTTTTTATGGCAGCATCCAATTTTAGTGATGAGCGC YIN_F000014
YIN_R000015 AGCATACCCAATTTGCGCTCATCACTAAAATTGGATGCTGCCATAAAAAACATGAC YIN_R000015
YIN_F000016 TGGCAGCATCCAATTTTAGTGATGAGCGCAAATTGGGTATGCTTTAACA YIN_F000016
YIN_R000017 TCGCGGTTAAATATTAACCAGGGATGTTAAAGCATACCCAATTTGCGCTC YIN_R000017
YIN_F000018 ACATCCCTGGTTAATATTTAACCGCGAATGTCATCATGATTTGTGTCA YIN_F000018
YIN_R000019 TGTGTAATTTTTTATTGACACAAATCATGATGACATTCGCGGT YIN_R000019

Total number of rows: 389123

Table truncated, full table size 25616 Kbytes.




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Supplementary file Size Download File type/resource
GPL17599_Yin29909_overlap_DF.txt.gz 10.4 Mb (ftp)(http) TXT

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