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Platform GPL166 Query DataSets for GPL166
Status Public on May 14, 2002
Title [Ye6100SubD] Affymetrix Yeast Genome 6K SubD Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Saccharomyces cerevisiae
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Affymetrix GeneChip Yeast Genome 6K SubD Array Ye6100subD.
Based upon the September 1996 release of the Saccharomyces Genome Database (SGD) and contains probes for the approximately 6100 ORFs identified at that time.

Annotations derived from Affymetrix 'Ye6100subD Probe Set Description' file (31 KB, 3/28/03)
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=ye6100
http://www.affymetrix.com/analysis/index.affx
Submission date May 14, 2002
Last update date Apr 15, 2009
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (11) GSM1783, GSM1784, GSM1785, GSM1786, GSM1787, GSM1788 
Series (2)
GSE52 Ume6 regulon
GSE26801 Loss of subcellular lipid transport due to ARV1 deficiency disrupts organelle homeostasis and activates the unfolded protein response

Data table header descriptions
ID Affymetrix Probe Set ID
GB_ACC GenBank Accession Number
ORF SGD identifier
Identifier Source The database from which the sequence used to design this probe set was taken.
Description description
SPOT_ID 'Control' or 'Gene'

Data table
ID GB_ACC ORF Identifier Source Description SPOT_ID
18srRnaa_at Z75578 GenBank Z75578 SGD:YLR154C Yeast S. cerevisiae 18S ribosomal RNA corresponds to 1-1799 in Z75578 (regions a-e represent transcript regions 5 prime to 3 prime respectively) Control Sequence
18srRnab_at Z75578 GenBank Z75578 SGD:YLR154C Yeast S. cerevisiae 18S ribosomal RNA corresponds to 1-1799 in Z75578 (regions a-e represent transcript regions 5 prime to 3 prime respectively) Control Sequence
18srRnac_at Z75578 GenBank Z75578 SGD:YLR154C Yeast S. cerevisiae 18S ribosomal RNA corresponds to 1-1799 in Z75578 (regions a-e represent transcript regions 5 prime to 3 prime respectively) Control Sequence
18srRnad_at Z75578 GenBank Z75578 SGD:YLR154C Yeast S. cerevisiae 18S ribosomal RNA corresponds to 1-1799 in Z75578 (regions a-e represent transcript regions 5 prime to 3 prime respectively) Control Sequence
18srRnae_at Z75578 GenBank Z75578 SGD:YLR154C Yeast S. cerevisiae 18S ribosomal RNA corresponds to 1-1799 in Z75578 (regions a-e represent transcript regions 5 prime to 3 prime respectively) Control Sequence
25srRnaa_at J01355 GenBank Z73326 SGD:YLR154C Yeast S.cerevisiae 25S ribosomal RNA corresponds to complement of 4212-7605 in Z73326 (regions a-e represent transcript regions 5 prime to 3 prime respectively) Control Sequence
25srRnab_at J01355 GenBank Z73326 SGD:YLR154C Yeast S.cerevisiae 25S ribosomal RNA corresponds to complement of 4212-7605 in Z73326 (regions a-e represent transcript regions 5 prime to 3 prime respectively) Control Sequence
25srRnac_at J01355 GenBank Z73326 SGD:YLR154C Yeast S.cerevisiae 25S ribosomal RNA corresponds to complement of 4212-7605 in Z73326 (regions a-e represent transcript regions 5 prime to 3 prime respectively) Control Sequence
BioB-5_at J04423 GenBank J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) Control Sequence
BioB-M_at J04423 GenBank J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) Control Sequence
BioB-3_at J04423 GenBank J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) Control Sequence
BioC-5_at J04423 GenBank J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) Control Sequence
BioC-3_at J04423 GenBank J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) Control Sequence
BioDn-5_at J04423 GenBank J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) Control Sequence
BioDn-3_at J04423 GenBank J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) Control Sequence
CreX-5_at X03453 GenBank X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) Control Sequence
CreX-3_at X03453 GenBank X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) Control Sequence
25srRnad_at J01355 GenBank Z73326 SGD:YLR154C Yeast S.cerevisiae 25S ribosomal RNA corresponds to complement of 4212-7605 in Z73326 (regions a-e represent transcript regions 5 prime to 3 prime respectively) Control Sequence
25srRnae_at J01355 GenBank Z73326 SGD:YLR154C Yeast S.cerevisiae 25S ribosomal RNA corresponds to complement of 4212-7605 in Z73326 (regions a-e represent transcript regions 5 prime to 3 prime respectively) Control Sequence
DapX-5_at L38424 GenBank L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) Control Sequence

Total number of rows: 1644

Table truncated, full table size 123 Kbytes.






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