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Platform GPL16242 Query DataSets for GPL16242
Status Public on Apr 01, 2013
Title NCI Glycoarray-220
Technology type spotted peptide or protein
Distribution non-commercial
Organisms Quercus alba; Gossypium hirsutum; Medicago sativa; Rhodotorula; Pandalus borealis; Gallus gallus; Homo sapiens; Bos taurus; Ovis aries; Mus musculus; Megathura crenulata; Bothrops moojeni; Frangula alnus; Senegalia senegal; Pachymenia carnosa; Dermestes lardarius
Manufacturer National Cancer Institute, Chemical Glycobiology Section
Manufacture protocol Glycoproteins and neoglycoproteins spotted onto epoxide functionalized glass slides (ArrayIt SME2) using a MicroGrid II arrayer.
Support Glass
Coating Epoxide
 
Description Spotted glycoproteins and neoglycoproteins
Each slide contains 16 identical array containing 220 components printed in duplicate (440 features total)
 
Citation(s) 22057524
Submission date Nov 04, 2012
Last update date Apr 01, 2013
Contact name Christopher Campbell
Organization name NCI
Street address 376 Boyles Street
City Frederick
State/province MD
ZIP/Postal code 21702
Country USA
 
Samples (960) GSM1030653, GSM1030654, GSM1030655, GSM1030656, GSM1030657, GSM1030658 
Series (12)
GSE42019 Baseline serum anti-glycan antibodies of 28 subjects in a clinical trial of PROSTVAC-VF, a therapeutic cancer vaccine [Training IgG 1:50]
GSE42020 Baseline serum anti-glycan antibodies of 28 subjects in a clinical trial of PROSTVAC-VF, a therapeutic cancer vaccine [Training IgM 1:50]
GSE42163 Baseline serum anti-glycan antibodies of 113 subjects in a clinical trial of PROSTVAC-VF, a therapeutic cancer vaccine [Validation IgG 1:50]

Data table header descriptions
ID
LINKER
CORE
SUGAR_RATIO
ORGANISM
SPOT_ID

Data table
ID LINKER CORE SUGAR_RATIO ORGANISM SPOT_ID
2'FucLac 3 atom BSA 7 Homo sapiens Fuca1-2Galb1-4Glc-BSA
3'SLacNAc 14 atom BSA 19 Homo sapiens Neu5Aca2-3Galb1-4GlcNAc ? BSA
3'Sia-3-FL 3 atom BSA 7 Homo sapiens Neu5Aca2-3Galb1-4(Fuca1-3)Glc -BSA
6'Slac APD HSA 13 Homo sapiens Neu5Aca2-6Galb1-4Glc-APD-HSA
Ac-A-Tn(Thr)-S-G - 05 hex BSA 5 Homo sapiens Ac-Ala-(GalNAca)Thr-Ser-Gly-Hex-BSA (muc4)
Ac-A-Tn(Thr)-S-G - 08 hex BSA 8 Homo sapiens Ac-Ala-(GalNAca)Thr-Ser-Gly-Hex-BSA (muc4)
Ac-A-Tn(Thr)-S-G - 23 hex BSA 23 Homo sapiens Ac-Ala-(GalNAca)Thr-Ser-Gly-Hex-BSA (muc4)
Ac-G-V-Tn(Thr)-S-A-G - 04 hex BSA 4 Homo sapiens Ac-Gly-Val-(GalNAca)Thr-Ser-Ala-Gly-Hex-BSA (muc1)
Ac-G-V-Tn(Thr)-S-A-G - 21 hex BSA 21 Homo sapiens Ac-Gly-Val-(GalNAca)Thr-Ser-Ala-Gly-Hex-BSA (muc1)
Ac-P-Tn(Thr)-T-G - 05 hex BSA 5 Homo sapiens Ac-Pro-(GalNAca)Thr-Thr-Gly-Hex-BSA (muc2)
Ac-P-Tn(Thr)-T-G - 08 hex BSA 8 Homo sapiens Ac-Pro-(GalNAca)Thr-Thr-Gly-Hex-BSA (muc2)
Ac-P-Tn(Thr)-T-G - 22 hex BSA 22 Homo sapiens Ac-Pro-(GalNAca)Thr-Thr-Gly-Hex-BSA (muc2)
Ac-S-S-S-G hex BSA 24 Homo sapiens Ac-Ser-Ser-Ser-Gly-Hex BSA
Ac-S-TF(Ser)-S-G - 04 hex BSA 4 Homo sapiens AcSer-(Galb1-3GalNAca)Ser-Ser-Gly-Hex-BSA
Ac-S-TF(Ser)-S-G - 16 hex BSA 16 Homo sapiens AcSer-(Galb1-3GalNAca)Ser-Ser-Gly-Hex-BSA
Ac-S-TF(Ser)-S-G - 28 hex BSA 28 Homo sapiens AcSer-(Galb1-3GalNAca)Ser-Ser-Gly-Hex-BSA
Ac-S-Thr-S-A-G - 18 hex BSA 18 Homo sapiens AcSer-Thr-Ser-Ala-Gly-Hex-BSA
Ac-S-Tn(Ser)-S-G - 04 hex BSA 4 Homo sapiens AcSer-(GalNAca)Ser-Ser-Gly-Hex-BSA
Ac-S-Tn(Ser)-S-G - 22 hex BSA 22 Homo sapiens AcSer-(GalNAca)Ser-Ser-Gly-Hex-BSA
Ac-S-Tn(Ser)-S-G - 33 hex BSA 33 Homo sapiens AcSer-(GalNAca)Ser-Ser-Gly-Hex-BSA

Total number of rows: 220

Table truncated, full table size 16 Kbytes.




Download family Format
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Supplementary data files not provided

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