NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL15831 Query DataSets for GPL15831
Status Public on Sep 30, 2012
Title Agilent-031749 Hp695 3 probes [Probe Name version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16031749 or 2531749.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
 
Submission date Jul 19, 2012
Last update date Sep 30, 2012
Contact name David Scott
E-mail(s) dscott@ucla.edu
Organization name UCLA/VA GLAHS
Street address 11301 Wilshire Blvd
City Los Angeles
State/province CA
ZIP/Postal code 91302
Country USA
 
Samples (22) GSM970501, GSM970502, GSM970503, GSM970504, GSM970505, GSM970506 
Series (1)
GSE39512 The relationship between inhibition of gastric acid secretion and eradication of Helicobacter pylori

Data table header descriptions
ID ProbeName
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ORF Orf name
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE ORF CHROMOSOMAL_LOCATION SEQUENCE
(+)E1A_r60_1 (+)E1A_r60_1 pos
(+)E1A_r60_3 (+)E1A_r60_3 pos
(+)E1A_r60_a104 (+)E1A_r60_a104 pos
(+)E1A_r60_a107 (+)E1A_r60_a107 pos
(+)E1A_r60_a135 (+)E1A_r60_a135 pos
(+)E1A_r60_a20 (+)E1A_r60_a20 pos
(+)E1A_r60_a22 (+)E1A_r60_a22 pos
(+)E1A_r60_a97 (+)E1A_r60_a97 pos
(+)E1A_r60_n11 (+)E1A_r60_n11 pos
(+)E1A_r60_n9 (+)E1A_r60_n9 pos
(+)eQC-39 (+)eQC-39 pos
(+)eQC-40 (+)eQC-40 pos
(+)eQC-41 (+)eQC-41 pos
(+)eQC-42 (+)eQC-42 pos
(-)3xSLv1 (-)3xSLv1 neg
CUST_1000_PI425913881 CUST_1000_PI425913881 FALSE HP0345 unmapped ATGGAAAATGATGTTAAAGAAGATCTAGAGCAAGCAAGACCAAAGTTA
CUST_1001_PI425913881 CUST_1001_PI425913881 FALSE HP0346 unmapped TGCTTGCACTATTGGGCTTTGGTTTGGAAGCGATGCAGCATTCAATTATATTGATGAATG
CUST_1002_PI425913881 CUST_1002_PI425913881 FALSE HP0346 unmapped GTTCTTGGATTGGCATTATTCTGTCAAGGGGGATTATAGCGAGCTTGCTCTTTTTGTAGC
CUST_1003_PI425913881 CUST_1003_PI425913881 FALSE HP0346 unmapped AGTGGATACCGATCTTTCTCAAAACGCAAAAATTTTAGACACTCTTGGCGATGAAGTGGC
CUST_1004_PI425913881 CUST_1004_PI425913881 FALSE HP0347 unmapped TCCTTTAGGCAAGCAATCAATCACGCTTGTTGAGCCTTTAAGCTATAACCCTTTTTTGGA

Total number of rows: 4820

Table truncated, full table size 588 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL15831_031749_D_GEO_20101215.txt.gz 1.5 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap