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Platform GPL15177 Query DataSets for GPL15177
Status Public on Jun 26, 2012
Title Agilent-031148 Yarrowia lipolytica V2 [Probe Name version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Yarrowia lipolytica
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Yarrowia lipolytica V2

Arrays of this design have barcodes that begin with 16031148 or 2531148.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jan 31, 2012
Last update date Jun 26, 2012
Contact name Nicolas Morin
E-mail(s) nmorin@grignon.inra.fr
Organization name INRA
Department UMR 1319 Micalis
Lab Biologie Intégrative du Métabolisme Lipidique Microbien
Street address Av. Lucien Bretignières
City Thiverval-Grignon
ZIP/Postal code F-78850
Country France
 
Samples (80) GSM868362, GSM868363, GSM868364, GSM868365, GSM868366, GSM868367 
Series (3)
GSE35445 Yarrowia lipolytica biolipid production during D-stat setup. [Part 1]
GSE35446 Yarrowia lipolytica biolipid production during D-stat setup. [Part 2]
GSE35447 Yarrowia lipolytica biolipid production during D-stat setup.
Relations
Alternative to GPL15178

Data table header descriptions
ID
ORF
SystematicName Gene ID (either control name, or gene ID based on the Genelevures annotation, see http://www.genolevures.org)
CHROMOSOMAL_LOCATION
DESCRIPTION
SEQUENCE

Data table
ID ORF SystematicName CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
Cereb_01 Cereb Cereb chrX:101-150 TM=84.6 EXONIC TGGGCACCTTCTCTCGATACGAGTCTACCCGATCTGGCCG
Cereb_02 Cereb Cereb chrX:1001-1050 TM=83.8 EXONIC CCATGCTGTTCGCCTCTGAGGCTTGTGTGGGCTCTAAGTT
Cereb_03 Cereb Cereb chrX:1251-1300 TM=84.3 EXONIC CTACCACCTGGGCCACTTCTCTAAGTTCATCCCCGAGGGC
HCHer_01 HCHer HCHer chrX:1201-1250 TM=79.9 EXONIC CTGGACTCTGACGGCTCTTTCTTCCTGTACTCTAAGCTGA
HCHer_02 HCHer HCHer chrX:701-750 TM=83.5 EXONIC CTCCTGAGCTGCTGGGAGGACCCTCTGTTTTTCTGTTCCC
HCHer_03 HCHer HCHer chrX:301-350 TM=83.4 EXONIC GGTGACGGTTTTTACGCCATGGACTACTGGGGACAGGGAA
LCHER_01 LCHer LCHer chrX:201-250 TM=83.2 EXONIC TGGAACCGACTTCACCCTGACCATTTCTTCTCTGCAGCCT
LCHER_02 LCHer LCHer chrX:401-450 TM=82.4 EXONIC GCCTGCTGAACAACTTTTACCCCCGAGAGGCTAAGGTTCA
LCHER_03 LCHer LCHer chrX:601-650 TM=82.4 EXONIC CTGTCCTCTCCCGTGACCAAGTCTTTTAACCGAGGCGAGT
NA2_01 NA2 NA2 chrX:101-150 TM=83.3 EXONIC CCAAGCTGGTCGAGTACCGAAACTGGTCTAAGCCCCAGTG
NA2_02 NA2 NA2 chrX:701-750 TM=84.5 EXONIC CTTGTTACCCCCGATACCCCGGCGTGCGATGTATCTGTCG
NA2_03 NA2 NA2 chrX:1051-1100 TM=82.9 EXONIC GTGATCGTGGACTCTGCCAACCGATCTGGATACTCTGGCA
YAc_1000471_0 YALI0A09900g YALI0A09900g chrA:1000462-1000511 Tm=83.5 INTRONIC TAGACAACATCATCTTCGTCGACCTACGACCCACTCAGACAATTGGAACA
YAc_1003556_1 YALI0A09922g YALI0A09922g chrA:1003547-1003596 Tm=80 INTRONIC GACAGATATGACTATGCCGGATATTCACCGTGAAGAAATTGCAGTATTTC
YAc_1003706_1 YALI0A09922g YALI0A09922g chrA:1003697-1003746 Tm=84.3 INTRONIC ACGACTACTTTCGGGTTCTCTCAACGTTGGCATCCCATTTTCAACAAACG
YAc_1003991_1 YALI0A09922g YALI0A09922g chrA:1003991-1004050 Tm=89.7 EXONIC AGAAGCTCGGTGGTGCCCAGAGCGGTAAGCTCACCAAGATCTACGATGTCCGAAAGAACA
YAc_1004091_1 YALI0A09922g YALI0A09922g chrA:1004091-1004140 Tm=86.4 EXONIC GCAGGTCCGTGAGTTCTACAAGGACAAGAAGTTCCTGCCCAAGGATCTCC
YAc_100583_0 YALI0A00803g YALI0A00803g chrA:100574-100623 Tm=84.6 EXONIC TCTACCATCTGTTTGACGACTTTGTCAAGCACCAGAAGAAGCTGCAGGAG
YAc_1005926_1 YALI0A09933g YALI0A09933g chrA:1005917-1005966 Tm=83.9 EXONIC ATGAGAGCTAAGTGGAGAAAGAAGAGAGTCAGACGACTCAAGCGAAAGCG
YAc_1009410_1 YALI0A09988g YALI0A09988g chrA:1009401-1009450 Tm=83.9 EXONIC GCCCAAGCAATCTCGTAGCATTACGGGATTTATCAACTACCTGACCAACG

Total number of rows: 14322

Table truncated, full table size 1767 Kbytes.




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