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Platform GPL15094 Query DataSets for GPL15094
Status Public on Jan 10, 2012
Title Agilent-028073 gencode_ncrna_8x60_1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16028073 or 2528073.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jan 05, 2012
Last update date Jan 17, 2013
Contact name Rory Johnson
E-mail(s) rory.johnson@crg.eu
Organization name Centre for Genomic Regulation
Department Bioinformatics and Genomics
Street address Calle Dr Aiguader, 88
City Barcelona
State/province Catalonia
ZIP/Postal code 08003
Country Spain
 
Samples (31) GSM857216, GSM857217, GSM857218, GSM857219, GSM857220, GSM857221 
Series (1)
GSE34894 Long non-coding RNA expression in Human tissues and cell lines

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
AGILENT SPOT ID
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
SPOT_ID Spot identifier
ORDER

Data table
ID COL ROW NAME AGILENT SPOT ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE SPOT_ID ORDER
1 192 328 GE_BrightCorner GE_BrightCorner pos CONTROL 1
2 192 326 DarkCorner DarkCorner pos CONTROL 2
3 192 324 DarkCorner DarkCorner pos CONTROL 3
4 192 322 CUST_56109_PI425136549 CUST_56109_PI425136549 FALSE ENSG00000230836 ens|ENSG00000230836 unmapped AGAGGACTTTTCAGCAACCCAACTAATTCACTCATTTTTCTCAAAGTTGAATTTTCTTCC ENSG00000230836 4
5 192 320 CUST_34498_PI425136549 CUST_34498_PI425136549 FALSE ENSG00000231238 ens|ENSG00000231238 unmapped CATGGTCGCTGAGTCAAGGACCTTCTCTTCTAGTGAATTTAAGGGTTTTGTGGAACACTA ENSG00000231238 5
6 192 318 CUST_4336_PI425136549 CUST_4336_PI425136549 FALSE ENSG00000205861 ens|ENSG00000205861 unmapped GCTTCAACTTTTCCATCTGCTCCTAAATAGAGAAAGAGCAAATAAAGAGATAGTTTGTGA ENSG00000205861 6
7 192 316 CUST_10965_PI425136549 CUST_10965_PI425136549 FALSE ENSG00000226673 ens|ENSG00000226673 unmapped TTTCCAAACACTGTACTTGCTTCTTTATCTGTCTCTCTATGAACCGTGAGTCCCAGAGGA ENSG00000226673 7
8 192 314 CUST_18637_PI425136549 CUST_18637_PI425136549 FALSE ENSG00000233755 ens|ENSG00000233755 unmapped CACCTAGAGCTCTTCAGATCTACCCTTGGTCATTGACATCCCAGCATGAATCAGTGACTC ENSG00000233755 8
9 192 312 CUST_26958_PI425136549 CUST_26958_PI425136549 FALSE ENSG00000224626 ens|ENSG00000224626 unmapped TGAAATTATCTGTTCATGTGCGTATTTCCTCCAGTAGACAATAAACTCCTTAACTCCAGG ENSG00000224626 9
10 192 310 CUST_57676_PI425136549 CUST_57676_PI425136549 FALSE ENSG00000244586 ens|ENSG00000244586 unmapped CCCAAATTGTGTCCTTTCATTTTAGGGTTCGGCAAAAACGGGGAGCAAAATAGGTGAAAG ENSG00000244586 10
11 192 308 CUST_29782_PI425136549 CUST_29782_PI425136549 FALSE ENSG00000230647 ens|ENSG00000230647 unmapped GCGGATTGGCAGAAGCTATTCTGGCCCATGTGCAGAGCATCAAGAATGTGTGCTGCAAAA ENSG00000230647 11
12 192 306 CUST_40790_PI425136549 CUST_40790_PI425136549 FALSE ENSG00000232807 ens|ENSG00000232807 unmapped CCGACCCCATTATGTGTGTGTGAGGCTGATTAAAGTGTTACCTGTCACCAGGTGTCGCCA ENSG00000232807 12
13 192 304 CUST_34359_PI425136549 CUST_34359_PI425136549 FALSE ENSG00000235772 ens|ENSG00000235772 unmapped TTATCAAGCCACCTGGAAACACACAGATGAAACAATTCCGACCATTGTGTCAGCACACAG ENSG00000235772 13
14 192 302 A_23_P48663 A_23_P48663 FALSE NM_021728 NM_021728 5015 OTX2 orthodenticle homeobox 2 Hs.288655 ENST00000446043 THC2622826 ref|NM_021728|ref|NM_172337|gb|AK314271|ens|ENST00000446043 chr14:57268815-57268756 hs|14q22.3 Homo sapiens orthodenticle homeobox 2 (OTX2), transcript variant 1, mRNA [NM_021728] GO:0003700(transcription factor activity)|GO:0005634(nucleus)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0007275(multicellular organismal development)|GO:0007411(axon guidance)|GO:0008190(eukaryotic initiation factor 4E binding)|GO:0008589(regulation of smoothened signaling pathway)|GO:0030426(growth cone)|GO:0030900(forebrain development)|GO:0030901(midbrain development)|GO:0040036(regulation of fibroblast growth factor receptor signaling pathway)|GO:0043565(sequence-specific DNA binding) TGCATGCAGAGGTCCTATCCCATGACCTATACTCAGGCTTCAGGTTATAGTCAAGGATAT 14
15 192 300 CUST_53427_PI425136549 CUST_53427_PI425136549 FALSE ENSG00000240935 ens|ENSG00000240935 unmapped TCAAAAATGGAGTTCCACTTCTCCCCGCAGACCTAGGTAAGACTTTCCCTTTCATCTTTG ENSG00000240935 15
16 192 298 CUST_1893_PI425136549 CUST_1893_PI425136549 FALSE ENSG00000224220 ens|ENSG00000224220 unmapped ACAGTCTACAGACCTGGGTGCAATGGTGAGAAAGACCTCAGTAAAGCAAAGGAATTACGA ENSG00000224220 16
17 192 296 CUST_22631_PI425136549 CUST_22631_PI425136549 FALSE ENSG00000233642 ens|ENSG00000233642 unmapped TTTTTCTTGCCATAAAAGTGATAAGGCATGAAATTCCAAGTTTAGGGTGTGAGCCTGGGG ENSG00000233642 17
18 192 294 CUST_3005_PI425136549 CUST_3005_PI425136549 FALSE ENSG00000232964 ens|ENSG00000232964 unmapped AGATTTGACTTAAATGTCACCTGTTTCAGCAAGGCACATGCTGACATGTCTTAGAAGTGT ENSG00000232964 18
19 192 292 CUST_11068_PI425136549 CUST_11068_PI425136549 FALSE ENSG00000234892 ens|ENSG00000234892 unmapped AGTAGACTGAGGCTTAGAGAGGGAAAGCACCTGGTTCAAGAGGCTTCAAAAGAAGCAAAA ENSG00000234892 19
20 192 290 CUST_34823_PI425136549 CUST_34823_PI425136549 FALSE ENSG00000236558 ens|ENSG00000236558 unmapped TTAGAGGAATGAAAACAGCCTGACAGACTACATGTTTTCTTGGAATGAAGTCTCCCCCAA ENSG00000236558 20

Total number of rows: 62976

Table truncated, full table size 13720 Kbytes.




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