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Platform GPL14642 Query DataSets for GPL14642
Status Public on Nov 30, 2011
Title Nimblegen S. pombe 10K
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Schizosaccharomyces pombe
Manufacturer NimbleGen
Manufacture protocol See manufacturer's website
Description TI4896_60mer_expr.ndf
Submission date Sep 30, 2011
Last update date Nov 30, 2011
Contact name Akira Yamashita
Phone +81-3-5841-4387
Organization name University of Tokyo
Department Department of Biophysics and Biochemistry
Street address Hong
City Tokyo
ZIP/Postal code 113-0033
Country Japan
Samples (2) GSM805261, GSM805262
Series (1)
GSE32516 Comparison of the global gene expression profiles between wild-type and lsg1 null strains

Data table header descriptions
ORF LINK_Suf:"[gene name] AND Schizosaccharomyces pombe[organism]"

Data table
1 TI4896S000001 "SPCP20C8.01c, len:248 SPCP20C8.01c, len:0, SIMILARITY:Schizosaccharomyces pombe, Q9Y7S1, hypothetical 12.8 kda protein., (113 aa), fasta scores: opt: 646, E():0, (89.7% identity in 107 aa) SPCP20C8.03, len:0, SIMILARITY:Schizosaccharomyces pombe, Q9Y7S2, hypothetical repeat containing protein., (396 aa), fasta scores: opt: 840, E():0, (57.1% identity in 322 aa)" SPCP20C8.01c
2 TI4896S000002 "SPCP20C8.02c, len:247" SPCP20C8.02c
3 TI4896S000003 "SPCP20C8.03, len:" SPCP20C8.03
4 TI4896S000004 "SPCC1884.01, len:479, possible pseudogen 2 non-conse nsus branch and acceptors, SIMILARITY:Saccharomyces cerevis iae virus la., Q87026, capsid., (697 aa), fasta scores: opt : 150, E():1.2e-15, (20.5% identity in 507 aa), has non-con sensus branch acceptor sites, but this prediction gave the best fasta score. Possible pseudo gene?" SPCC1884.01
5 TI4896S000005 "SPCC1884.02, len:244, SIMILARITY:Alcaligenes eutroph us., HOXN_ALCEU, high-affinity nickel transport protein., ( 351 aa), fasta scores: opt: 537, E():0, (39.0% identity in 223 aa)" SPCC1884.02
6 TI4896S000006 "SPCC757.02c, len:405, SIMILARITY:Arabidopsis thaliana, CAB45057, hypothetical 44.2 kD protein., (388 aa), fasta scores: opt: 435, E():1.1e-22, (27.8% identity in 400 aa)" SPCC757.02c
7 TI4896S000007 "SPCC757.03c, len:244, SIMILARITY:Schizosaccharomyces pombe, YA02_SCHPO, hypothetical 26.1 kD protein c5h10.02c, (240 aa), fasta scores: opt: 986, E():0, (60.7% identity i n 234 aa)" SPCC757.03c
8 TI4896S000008 "SPCC757.04, len:684, SIMILARITY:Schizosaccharomyces pombe, E1319426, putative transcriptional activator, (555 a a), fasta scores: opt: 1561, E():0, (42.9% identity in 567 aa)" SPCC757.04
9 TI4896S000009 "SPCC757.05c, len:400, SIMILARITY:Caenorhabditis eleg ans., Q18622, similar to e. coli acetylornithine deacety lase, (244 aa), fasta scores: opt: 420, E():4.6e-23, (38.5% identity in 213 aa)" SPCC757.05c
10 TI4896S000010 --unknown
11 TI4896S000011 --unknown
12 TI4896S000012 --unknown
13 TI4896S000013 "SPCC757.09c, len:398, SIMILARITY:Saccharomyces cerev isiae, YBL032W, YBD2_YEAST, hypothetical 41.7 kD protein in rib1-aac2 intergenic region., (381 aa), fasta scores: opt: 187, E():5.1e-18, (27.9% identity in 340 aa)" SPCC757.09c
14 TI4896S000014 "SPCC757.10, len:186, LOW SIMILARITY:Saccharomyces cerevisiae, VM12_YEAST, vacuolar atpase assembly integral membrane protein vma12, (215 aa), fasta scores: opt: 164, E():5.7e-05, (29.5% identity in 105 aa)" SPCC757.10
15 TI4896S000015 "SPCC757.11c, len:471, SIMILARITY:Schizosaccharomyces pombe, Q12519, hypothetical 56.1 kD protein., (500 aa), fa sta scores: opt: 1176, E():0, (40.6% identity in 443 aa)" SPCC757.11c
16 TI4896S000016 "SPCC757.12, len:625, SIMILARITY:Schizosaccharomyces pombe, Q9Y7S9, alpha-amylase SPCC63.02C, (564 aa), fasta scores: opt: 1578, E():0, (43.4% identity in 546 aa)" SPCC757.12
17 TI4896S000017 "SPCC757.13, len:522, SIMILARITY:Schizosaccharomyces pombe, O94491, putative allantoate permease., (508 aa), fasta scores: opt: 1083, E():0, (36.0% identity in 520 aa)" SPCC757.13
18 TI4896S000018 "SPCC757.14, len:256, SIMILARITY:Schizosaccharomyces pombe, Q12519, hypothetical 56.1 kD protein, (500 aa), fast a scores: opt: 908, E():0, (58.5% identity in 246 aa)" SPCC757.14
19 TI4896S000019 "SPCC613.02, len:497, shows strong similarity to SPCC 613.01, SIMILARITY:Schizosaccharomyces pombe, Q12519, hypot hetical 56.1 kd protein., (500 aa), fasta scores: opt: 1890 , E():0, (56.9% identity in 501 aa)" SPCC613.02
20 TI4896S000020 "SPCC613.03, len:189, SIMILARITY:Saccharomyces cerevi siae, YLR250W, S120_YEAST, protein ssp120 precursor, (234 a a), fasta scores: opt: 174, E():4.6e-17, (33.9% identity in 192 aa)" SPCC613.03

Total number of rows: 9994

Table truncated, full table size 1601 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL14642_TI4896_60mer_expr.ndf.gz 4.0 Mb (ftp)(http) NDF
GPL14642_TI4896_60mer_expr.ngd.gz 342.7 Kb (ftp)(http) NGD

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