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Status
Public on Mar 16, 2011
Title
Agilent-031422 S_pneumoniae_CGH
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Streptococcus pneumoniae Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Arrays of this design have barcodes that begin with 16031422 or 2531422.. Orientation:. Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.. The ID column represents the Agilent Feature Extraction feature number.. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).. To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions..
Submission date
Mar 15, 2011
Last update date
Mar 16, 2011
Contact name
PFGRC JCVI
E-mail(s)
jli@jcvi.org Phone
3017957840
Organization name
J. Craig Venter Institute
Department
PFGRC
Street address
9704 Medical Center Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Samples (255)
GSM726976 , GSM727014 , GSM727535 , GSM727536 , GSM727553 , GSM727554
GSM727560 ,
GSM727605 ,
GSM727606 ,
GSM727607 ,
GSM727608 ,
GSM727657 ,
GSM727658 ,
GSM727844 ,
GSM727845 ,
GSM727852 ,
GSM727853 ,
GSM727854 ,
GSM727902 ,
GSM727903 ,
GSM727904 ,
GSM727905 ,
GSM727912 ,
GSM727913 ,
GSM727914 ,
GSM727915 ,
GSM727916 ,
GSM727917 ,
GSM727918 ,
GSM727919 ,
GSM727920 ,
GSM727921 ,
GSM727922 ,
GSM727923 ,
GSM727924 ,
GSM727925 ,
GSM727926 ,
GSM727927 ,
GSM727928 ,
GSM727929 ,
GSM727930 ,
GSM727931 ,
GSM727932 ,
GSM727933 ,
GSM727934 ,
GSM727935 ,
GSM727936 ,
GSM728306 ,
GSM728335 ,
GSM728336 ,
GSM728337 ,
GSM728338 ,
GSM728339 ,
GSM728340 ,
GSM728341 ,
GSM728342 ,
GSM728343 ,
GSM728344 ,
GSM728345 ,
GSM728346 ,
GSM728347 ,
GSM728348 ,
GSM728349 ,
GSM728350 ,
GSM728351 ,
GSM728390 ,
GSM728438 ,
GSM728586 ,
GSM728587 ,
GSM728588 ,
GSM728589 ,
GSM728590 ,
GSM728591 ,
GSM728592 ,
GSM728593 ,
GSM728594 ,
GSM728595 ,
GSM728596 ,
GSM728597 ,
GSM728598 ,
GSM728599 ,
GSM728600 ,
GSM728601 ,
GSM728602 ,
GSM728928 ,
GSM728929 ,
GSM728930 ,
GSM728932 ,
GSM728933 ,
GSM728934 ,
GSM728935 ,
GSM728936 ,
GSM728937 ,
GSM728938 ,
GSM728939 ,
GSM728940 ,
GSM728941 ,
GSM728942 ,
GSM728943 ,
GSM728944 ,
GSM728945 ,
GSM728946 ,
GSM728947 ,
GSM728948 ,
GSM728949 ,
GSM728950 ,
GSM728951 ,
GSM728952 ,
GSM728953 ,
GSM728954 ,
GSM728955 ,
GSM728956 ,
GSM728957 ,
GSM728958 ,
GSM728959 ,
GSM728960 ,
GSM728961 ,
GSM728962 ,
GSM728963 ,
GSM728984 ,
GSM728985 ,
GSM728986 ,
GSM728987 ,
GSM728988 ,
GSM728989 ,
GSM728990 ,
GSM728991 ,
GSM728992 ,
GSM728993 ,
GSM728994 ,
GSM728995 ,
GSM728996 ,
GSM728997 ,
GSM728998 ,
GSM728999 ,
GSM729000 ,
GSM729001 ,
GSM729002 ,
GSM729003 ,
GSM729004 ,
GSM729005 ,
GSM729006 ,
GSM729007 ,
GSM729008 ,
GSM729009 ,
GSM729010 ,
GSM729011 ,
GSM729012 ,
GSM729013 ,
GSM729014 ,
GSM729015 ,
GSM729016 ,
GSM729017 ,
GSM729018 ,
GSM729019 ,
GSM729020 ,
GSM729021 ,
GSM729022 ,
GSM729023 ,
GSM729024 ,
GSM729025 ,
GSM729026 ,
GSM729027 ,
GSM729028 ,
GSM729029 ,
GSM729030 ,
GSM729031 ,
GSM729032 ,
GSM729033 ,
GSM729054 ,
GSM729055 ,
GSM729056 ,
GSM729101 ,
GSM729102 ,
GSM729103 ,
GSM729104 ,
GSM729105 ,
GSM729106 ,
GSM729203 ,
GSM729204 ,
GSM729205 ,
GSM729206 ,
GSM729207 ,
GSM729208 ,
GSM729209 ,
GSM729210 ,
GSM729211 ,
GSM729212 ,
GSM729221 ,
GSM729222 ,
GSM729223 ,
GSM729224 ,
GSM729225 ,
GSM729226 ,
GSM729227 ,
GSM729228 ,
GSM729229 ,
GSM729230 ,
GSM729231 ,
GSM729232 ,
GSM729256 ,
GSM729257 ,
GSM729258 ,
GSM729259 ,
GSM729260 ,
GSM729261 ,
GSM729262 ,
GSM729263 ,
GSM729264 ,
GSM729273 ,
GSM729274 ,
GSM729275 ,
GSM729276 ,
GSM729277 ,
GSM729278 ,
GSM729279 ,
GSM729280 ,
GSM729281 ,
GSM729282 ,
GSM729283 ,
GSM729284 ,
GSM729285 ,
GSM729286 ,
GSM729287 ,
GSM729288 ,
GSM729289 ,
GSM729290 ,
GSM729291 ,
GSM729292 ,
GSM729293 ,
GSM729294 ,
GSM729295 ,
GSM729392 ,
GSM729393 ,
GSM729394 ,
GSM729395 ,
GSM729396 ,
GSM729397 ,
GSM729398 ,
GSM729399 ,
GSM729400 ,
GSM729402 ,
GSM729403 ,
GSM729404 ,
GSM729405 ,
GSM729622 ,
GSM729623 ,
GSM729672 ,
GSM729673 ,
GSM729674 ,
GSM729675 ,
GSM729676 ,
GSM729677 ,
GSM729678 ,
GSM729850 Series (1)
GSE29501 Comparative genomic hybridization study of Streptococcus pneumoniae
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ORF Name of ORF ORF Name
SEQUENCE Oligo sequence
CHROMOSOMAL_LOCATION Chromosomal Location
SPOT_ID
Data table ID COL ROW SPOT_ID CONTROL_TYPE ORF SEQUENCE CHROMOSOMAL_LOCATION SPOT_ID 1
266
170
DarkCorner
pos
--DarkCorner
2
266
168
DarkCorner
pos
--DarkCorner
3
266
166
DarkCorner
pos
--DarkCorner
4
266
164
DarkCorner
pos
--DarkCorner
5
266
162
DarkCorner
pos
--DarkCorner
6
266
160
DarkCorner
pos
--DarkCorner
7
266
158
DarkCorner
pos
--DarkCorner
8
266
156
DarkCorner
pos
--DarkCorner
9
266
154
DarkCorner
pos
--DarkCorner
10
266
152
DarkCorner
pos
--DarkCorner
11
266
150
DarkCorner
pos
--DarkCorner
12
266
148
ORF00458_1:SPNGD012_61R_0
FALSE
ORF00458 TCTGGATCCTCTTCTTCGACGATAGCACCCAATTTTTCAAAGTGTTTGGCCGCGTTTAAG
unmapped
13
266
146
ORF00164_1:SPNGD013_41F_0
FALSE
ORF00164 GGGACAACGTTCGTGACTTAAATCAAGAAGAGAGTTCTAAGAAATTATCAAGTATTAACG
unmapped
14
266
144
psm21.transcript.268331073.1:SK321_1101R_0
FALSE
TCCCAGAGATTGCTGGTATCAATCAAATCTTTATAAGTTACATCACTAGAATAGATAGGA
unmapped
15
266
142
smi_1563:B6_1441F_0
FALSE
smi_1563 ACTCGTTTGAATCATCCAAATATTTTACAACATGTAAACTGGGTTGCAGCCTATACGGAT
unmapped
16
266
140
smi_0278:B6_181R_0
FALSE
smi_0278 AAAAAAAGAAAAATTAAAACTTGCTAATTGCGTTTTACGAGCTCCAATAATAAACAGCAC
unmapped
17
266
138
SPH_1039:Hungary19A-6_681F_0
FALSE
SPH_1039 CGACTTAGATAATGTTCATGGAGCAGAAGACAAGTATGGTCCTCTCATTGGAAAAGTTGA
unmapped
18
266
136
CGSSp18BS74_08230:SP18-BS74_1F_0
FALSE
ATGAATACCTATCAATTAAATAATGGAGTAGAAATTCCAGTATTGGGATTTGGAACTTTT
unmapped
19
266
134
CAP_LOCUS:SPC06A_0015:34351_271R_0
FALSE
GATATTGTCACCTAAAATCAAGGCAACGCTATCGTCACCGATAAACTCTTCCCCAATGAT
unmapped
20
266
132
CAP_LOCUS:SPC23A_0009:119645_991R_0
FALSE
TTCAATAACCTTATGAAGATTATCTTTTTCCCAGTAATCAGCACCATCCTCAGCTACTTC
unmapped
45220 5186 Kbytes .Supplementary data files not provided
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