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Platform GPL128 Query DataSets for GPL128
Status Public on Oct 01, 2002
Title Atlas Human 1.2 Array II (Cat. #7852-1)
Technology type spotted DNA/cDNA
Distribution commercial
Organism Homo sapiens
Manufacturer BD Biosciences Clontech
Manufacture protocol see manufacturer's web site
 
Description Nylon, broad-coverage human cDNA array. The cDNA fragments (200-600 bp) are PCR-amplified using gene-specific primers, and are selected so that they lack repetitive elements and have minimal homology with other genes on the array.
 
Web link http://www.clontech.com/atlas/index.shtml
Submission date Apr 24, 2002
Last update date Apr 09, 2008
Organization BD Biosciences Clontech
E-mail(s) tech@clontech.com
Phone 877-232-8995
URL http://www.clontech.com
Street address 1020 East Meadow Circle
City Palo Alto
State/province CA
ZIP/Postal code 94303-4230
Country USA
 
Samples (19) GSM11432, GSM11433, GSM11434, GSM11435, GSM11436, GSM70246 
Series (3)
GSE751 HEVEC dedifferentiation
GSE3168 Genes modulated by DNA demethylation in UM1 cells
GSE4704 Myocardial gene expression of hibernating and control tissue from patients with ischemic left ventricular dysfunction

Data table header descriptions
ID unique reference number used by BD Biosciences Clontech to identify each gene in collection
GENE_NAME set of names commonly used for the gene, based on the current literature
COORDINATE array coordinate
GB_LIST GenBank accession number
SP LIST SwissProt accession number
GENE Entrez GENE ID
DESC description
SPOT_ID Spot identifier
CLASSIFICATION set of functional classifications for the gene

Data table
ID GENE_NAME COORDINATE GB_LIST SP LIST GENE DESC SPOT_ID CLASSIFICATION
16 liver glyceraldehyde 3-phosphate dehydrogenase (GAPDH; G3PDH) G27 X01677 P04406 2597 glyceraldehyde-3-phosphate dehydrogenase FL02 FL03 FY02 SC00 SN00
49 cytoplasmic beta-actin (ACTB) G43 X00351 P02570, Q11211, P99021, Q64316, P70514 60 actin, beta FW00 SC00 SK00
901 tubulin alpha 1 (TUBA1) G29 K00558 P04687 10376 tubulin, alpha, ubiquitous FW00 SC00 SK00
902 major histocompatibility complex class I C (HLAC) G31 M11886 P10321 3107 major histocompatibility complex, class I, C FE02 SB00
903 23-kDa highly basic protein; 60S ribosomal protein L13A (RPL13A) G45 X56932 P40429 23521 ribosomal protein L13a FN01 FE03 SC00 SB00
904 40S ribosomal protein S9 (RPS9) G47 U14971 P46781 6203 ribosomal protein S9 FN01 SC00
905 ubiquitin C (UBC) G11 M26880 7316 ubiquitin C FU00 FH00 FQ03 SC00 SN00
906 phospholipase A2; tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta polypeptide (YWHAZ); 14-3-3 protein zeta/delta; protein kinase C inhibitor protein 1 (KCIP1); factor activating exoenzyme S (FAS) G13 M86400 P29312, P29213 7534 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide FT06 FL05 SC00
907 hypoxanthine-guanine phosphoribosyltransferase 1 (HPRT1) G15 V00530 P00492 3251 hypoxanthine phosphoribosyltransferase 1 (Lesch-Nyhan syndrome) FL06 SC00
AF104419 tumor necrosis factor receptor superfamily member 6B(TNFRSF6B); decoy receptor 3 (DCR3) D07k AF104419 O95407 8771 tumor necrosis factor receptor superfamily, member 6b, decoy FO02 FV06 SB00
B1 annexin II (ANX2); lipocortin II; calpactin I heavy subunit; chromobindin 8; protein I; placental anticoagulant protein IV (PAPIV) C04g D00017 P07355 302 annexin A2 FK03 FW04 SB00
B10 KIAA0054 F13e D29677 P42694 9931 helicase KIAA0054 FX00 SX00
B100 aldehyde dehydrogenase E3 isozyme; gamma-aminobutyraldehyde dehydrogenase; R-aminobutyraldehyde dehydrogenase; ALDH7; ALDH4 C11n U34252 P49189 223 aldehyde dehydrogenase 9 family, member A1 FL03 FL08 SC00
B101 LAF-4 protein; lymphoid nuclear protein A06i U34360 P51826 3899 lymphoid nuclear protein related to AF4 FB03 SN00
B102 granzyme K (GZMK); granzyme 3; NK-tryptase-2 (TRYP2); fragmentin 3 B05c U35237 P49863 3003 granzyme K (serine protease, granzyme 3; tryptase II) FE03 SS00
B103 Ikaros/LyF-1 homolog hIk-1 A06j U40462 Q13422, O00598 10320 zinc finger protein, subfamily 1A, 1 (Ikaros) FB03 SN00
B104 nuclear pore complex protein 98 (NUP98); 98-kDa nucleoporin B10e U41815 P52948 4928 nucleoporin 98kD FG00 FK05 SU00
B105 retinoic acid-induced gene E (RIGE); lymphocyte antigen 6 complex locus E (LY6E); thymic shared antigen 1 (TSA1); stem cell antigen 2 (SCA2) F11g U42376 Q16553 4061 lymphocyte antigen 6 complex, locus E FV07 SB00
B106 signal transducing adaptor molecule (STAM) E07k U43899 Q92783 8027 signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 FT10 SC00
B107 clathrin assembly lymphoid myeloid leukemia protein (CALM) B11g U45976 Q13492 8301 phosphatidylinositol binding clathrin assembly protein FG00 FW04 SK00

Total number of rows: 1185

Table truncated, full table size 173 Kbytes.






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