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Platform GPL1219 Query DataSets for GPL1219
Status Public on May 07, 2004
Title Amersham Biosciences CodeLink UniSet Mouse I Bioarray
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Mus musculus
 
Description CodeLink UniSet Mouse I Bioarray contains single-stranded oligonucleotide probes derived from a large majority of publicly available, well-annotated mRNA sequences found in the Mouse UniGene set of unique clusters. Each bioarray contains probes for an independent assay of all 10,000 genes in the set.

* ~10 000 mouse genes — 1 specific, prescreened probe per gene, functionally validated

* one set of housekeeping genes that may be used for baseline normalization

* 18 bacterial positive control probes from 6 genes with 6 corresponding spikes included in the cDNA Synthesis Kit to monitor
Keywords = http://www1.amershambiosciences.com/APTRIX/upp01077.nsf/Content/codelink_uniset_mouse1_bioarray?OpenDocument&hometitle=codelink
 
Submission date May 05, 2004
Last update date Oct 28, 2005
Contact name Hanjoong Jo
E-mail(s) hanjoong.jo@bme.gatech.edu
Phone 404-712-9654
Fax 404-727-3330
Organization name Emory University
Department Biomedical Engineering
Street address 2005 WMB
City Atlanta
State/province GA
ZIP/Postal code 30068
Country USA
 
Samples (6) GSM22097, GSM22098, GSM22099, GSM22100, GSM22101, GSM22102
Series (1)
GSE1367 Simulated Microgravity Inhibits Differentiation and Alters Gene Expression Profiles of 2T3 Pre-osteoblasts

Data table header descriptions
ID
GB_ACC GenBank Accession Number
Probe_Name Associates the accession number to the probe on which it was hybridized
Description Includes CDS information
Type Type of gene of interest (Discovery)
SPOT_ID Column added by GEO staff to facilitate sequence tracking in Entrez GEO

Data table
ID GB_ACC Probe_Name Description Type SPOT_ID
1 AA015085 AA015085_PROBE1 MI63B01.R1 SOARES MOUSE EMBRYO NBME13.5 14.5 MUS MUSCULUS CDNA CLONE IMAGE:468169 5' SIMILAR TO PIR:A39762 A39762 COLLAGEN ALPHA 1(XIV) CHAIN - BOVINE ; MRNA SEQUENCE DISCOVERY
2 AA015403 AA015403_PROBE1 MH21B01.R1 SOARES MOUSE PLACENTA 4NBMP13.5 14.5 MUS MUSCULUS CDNA CLONE IMAGE:443113 5' SIMILAR TO GB:M90356_CDS1 TRANSCRIPTION FACTOR BTF3 (HUMAN); MRNA SEQUENCE DISCOVERY
3 AA024083 AA024083_PROBE1 MH98H04.R1 SOARES MOUSE PLACENTA 4NBMP13.5 14.5 MUS MUSCULUS CDNA CLONE IMAGE:459031 5' SIMILAR TO SW:RS7_THEMA P38526 30S RIBOSOMAL PROTEIN S7 ; MRNA SEQUENCE DISCOVERY
4 AA032529 AA032529_PROBE1 MI30B12.R1 SOARES MOUSE EMBRYO NBME13.5 14.5 MUS MUSCULUS CDNA CLONE IMAGE:465023 5' SIMILAR TO GB:X61452 M.MUSCULUS MRNA FOR H5 CLONE (MOUSE); MRNA SEQUENCE DISCOVERY
5 AA041973 AA041973_PROBE1 MJ03B01.R1 SOARES MOUSE EMBRYO NBME13.5 14.5 MUS MUSCULUS CDNA CLONE IMAGE:474985 5', MRNA SEQUENCE DISCOVERY
6 AA047943 AA047943_PROBE1 MJ23F01.R1 SOARES MOUSE EMBRYO NBME13.5 14.5 MUS MUSCULUS CDNA CLONE IMAGE:476953 5', MRNA SEQUENCE DISCOVERY
7 AA060082 AA060082_PROBE1 ML32G09.R1 STRATAGENE MOUSE TESTIS (#937308) MUS MUSCULUS CDNA CLONE IMAGE:513760 5' SIMILAR TO TR:G558214 G558214 SMALLEST SUBUNIT OF TFIIA. ; MRNA SEQUENCE DISCOVERY
8 AA103180 AA103180_PROBE1 MO20H07.R1 LIFE TECH MOUSE EMBRYO 13 5DPC 10666014 MUS MUSCULUS CDNA CLONE IMAGE:554173 5' SIMILAR TO GB:A06977 SERUM ALBUMIN PRECURSOR (HUMAN); MRNA SEQUENCE DISCOVERY
9 AA105755 AA105755_PROBE1 ML84C01.R1 STRATAGENE MOUSE KIDNEY (#937315) MUS MUSCULUS CDNA CLONE IMAGE:518688 5' SIMILAR TO GB:J05096_RNA1 SODIUM/POTASSIUM-TRANSPORTING ATPASE ALPHA-1 CHAIN (HUMAN); MRNA SEQUENCE DISCOVERY
10 AA116457 AA116457_PROBE1 MP95D10.R1 SOARES_THYMUS_2NBMT MUS MUSCULUS CDNA CLONE IMAGE:576979 5', MRNA SEQUENCE DISCOVERY
11 AA118546 AA118546_PROBE1 MN09C06.R1 BEDDINGTON MOUSE EMBRYONIC REGION MUS MUSCULUS CDNA CLONE IMAGE:537418 5' SIMILAR TO SW:ACTV_BOVIN P32391 ACTIN-LIKE PROTEIN ; MRNA SEQUENCE DISCOVERY
12 AA124289 AA124289_PROBE1 MQ07E04.R1 SOARES_THYMUS_2NBMT MUS MUSCULUS CDNA CLONE IMAGE:578046 5' SIMILAR TO SW:COP1_ARATH P43254 COP1 REGULATORY PROTEIN ; MRNA SEQUENCE DISCOVERY
13 AA124955 AA124955_PROBE1 MP80G04.R1 SOARES_THYMUS_2NBMT MUS MUSCULUS CDNA CLONE IMAGE:575574 5' SIMILAR TO GB:X90945 M.MUSCULUS MRNA FOR CASEIN KINASE I-ALPHA (MOUSE); MRNA SEQUENCE DISCOVERY
14 AA170147 AA170147_PROBE1 MS59E04.R1 STRATAGENE MOUSE EMBRYONIC CARCINOMA (#937317) MUS MUSCULUS CDNA CLONE IMAGE:615870 5' SIMILAR TO TR:G1002369 G1002369 COATOMER PROTEIN. ; MRNA SEQUENCE DISCOVERY
15 AA175619 AA175619_PROBE1 MS93F08.R1 SOARES MOUSE 3NBMS MUS MUSCULUS CDNA CLONE IMAGE:619143 5', MRNA SEQUENCE DISCOVERY
16 AA230756 AA230756_PROBE1 MY32F12.R1 BARSTEAD MOUSE POOLED ORGANS MPLRB4 MUS MUSCULUS CDNA CLONE IMAGE:697583 5' SIMILAR TO TR:E236516 E236516 F44G4.1 ; MRNA SEQUENCE DISCOVERY
17 AA240611 AA240611_PROBE1 MV34B07.R1 GUAYWOODFORD BEIER MOUSE KIDNEY DAY 0 MUS MUSCULUS CDNA CLONE IMAGE:656917 5', MRNA SEQUENCE DISCOVERY
18 AA269839 AA269839_PROBE1 VA60C11.R1 SOARES MOUSE 3NME12 5 MUS MUSCULUS CDNA CLONE IMAGE:735764 5' SIMILAR TO GB:M20480_RNA2 MOUSE BRAIN NEUROFILAMENT-L MRNA, COMPLETE CDS (MOUSE); MRNA SEQUENCE DISCOVERY
19 AA271520 AA271520_PROBE1 VA83E10.R1 SOARES MOUSE NML MUS MUSCULUS CDNA CLONE IMAGE:737994 5', MRNA SEQUENCE DISCOVERY
20 AA388194 AA388194_PROBE1 VC88B11.R1 KO MOUSE EMBRYO 11 5DPC MUS MUSCULUS CDNA CLONE IMAGE:790077 5' SIMILAR TO TR:G1098654 G1098654 CART-1. ; MRNA SEQUENCE DISCOVERY

Total number of rows: 10500

Table truncated, full table size 1216 Kbytes.






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