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Platform GPL10592 Query DataSets for GPL10592
Status Public on Jul 01, 2010
Title JCVI PFGRC Staphylococcus aureus 16K v9 array designed primarily based on strain N315
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Staphylococcus aureus
Manufacturer JCVI PFGRC
Manufacture protocol 9QSA, with arrayer AUSHON, machine cycles 0, pen id 0, pen cycles 0, operator 0, humidity control 0, humidity set point0.000
Coating aminosilane
 
Description This set includes 4528 oligonucleotides, has 16416 spots distributed in 48 blocks.
 
Web link http://pfgrc.jcvi.org/descriptionPages.shtml
Submission date Jun 24, 2010
Last update date Jul 01, 2010
Contact name PFGRC JCVI
E-mail(s) jli@jcvi.org
Phone 3017957840
Organization name J. Craig Venter Institute
Department PFGRC
Street address 9704 Medical Center Drive
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Samples (6) GSM721648, GSM721649, GSM721650, GSM721651, GSM721652, GSM721653
Series (1)
GSE29157 Staphylococcus aureus walKR mutants (TPS3130 and TPS3190) vs. parent strains (JKD6009 and JKD6004)

Data table header descriptions
ID Unique identification of each oligo
SEQUENCE Oligo sequence
GC% GC content of the sequence
Internal Repeat Score Internal repeat score
Self-Annealing Score Self-anneal score
Primary Strain The strain of primary target
Primary Target Locus primarily hit by the oligo
Common Name of Primary Target Common name of primary target
Gene Symbol Gene symbol
Strain pLW043 Target map of strain pLW043
Strain USA300 Target map of strain USA300
Strain MRSA252 Target map of strain MRSA252
Strain MSSA476 Target map of strain MSSA476
Strain COL Target map of strain COL
Strain Mu50 Target map of strain Mu50
Strain MW2 Target map of strain MW2
Strain N315 Target map of strain N315
ORF ORF Name
SPOT_ID

Data table
ID SEQUENCE GC% Internal Repeat Score Self-Annealing Score Primary Strain Primary Target Common Name of Primary Target Gene Symbol Strain pLW043 Strain USA300 Strain MRSA252 Strain MSSA476 Strain COL Strain Mu50 Strain MW2 Strain N315 ORF SPOT_ID
9QSA00001_A_10 AATACATAAAGATGAAGCTACAACTAAAGTTGTCAGTGATAACACGGAACCGCCGATTGAATCAAAAGGC 38.57 29 72 N315 SA0121 hypothetical protein SAUSA300_0128::70::97.14286::1.1E-10::+ SAR0128::70::94.28571::8.8E-10::+ SAS0100::70::95.71428::2.8E-10::+ SACOL0110::70::97.14286::1.1E-10::+ SAV0125::70::100.0::1.7E-11::+ MW0099::70::95.71428::2.8E-10::+ SA0121::70::100.0::1.7E-11::+ SA0121
9QSA00001_A_11 GATATGTATGTGGTACCACCATCAAGACTTATCAATGAAATACCTTACGCAATGAAACAATTAGAAAGTT 32.86 31 88 N315 SA0007 hypothetical protein SAUSA300_0007::70::98.57143::1.2E-10::+ SAR0007::70::98.57143::1.2E-10::+ SAS0007::70::98.57143::1.2E-10::+ SACOL0007::70::98.57143::6.4E-11::+ SAV0007::70::100.0::4.3E-11::+ MW0007::70::98.57143::1.1E-10::+ SA0007::70::100.0::4.3E-11::+ SA0007
9QSA00001_A_12 TAGACTGTGACATCATAACTCATTTAAGAACTTCGCTTATTAATTTTCTACCAATACAATCCCTTCTAAG 31.43 31 89 N315 SAS004 hypothetical protein SAR0130a::70::92.85714::1.0E-8::+ SAS0101a::70::97.14286::4.6E-10::+ SAV0127::70::100.0::6.9E-11::+ MW0101::70::97.14286::4.5E-10::+ SAS004::70::100.0::6.9E-11::+ SAS004
9QSA00001_A_13 TTAGAATTAGTGAGACAATTACAATTTTTTATAAATGAACGTATTATACCGATAATCCCACAACAAGGCT 28.57 30 114 N315 SA0008 histidine ammonia-lyase hutH SAUSA300_0008::70::98.57143::2.5E-10::+ SAR0008::70::98.57143::2.5E-10::+ SAS0008::70::98.57143::2.5E-10::+ SACOL0008::70::98.57143::2.5E-10::+ SAV0008::70::100.0::9.7E-11::+ MW0008::70::98.57143::2.5E-10::+ SA0008::70::100.0::9.7E-11::+ SA0008
9QSA00001_A_14 TAGCAACATTAAGATTGTTAGAAATCATTAAAAAATATAATAGTCATATAAAACGTTTTATCTTTGCTTC 21.43 34 112 N315 SA0123 hypothetical protein SAUSA300_0130::70::98.57143::1.6E-10::+ SAS0102::70::100.0::6.0E-11::+ SACOL0113::70::98.57143::1.6E-10::+ SAV0128::70::100.0::6.0E-11::+ MW0102::70::100.0::6.0E-11::+ SA0123::70::100.0::6.0E-11::+ SA0123
9QSA00001_A_15 GGATTTAGTGCAAGCAAAACATATGATATAGAAGTTTGGTTACCAAGCTACAATGATTATAAAGAAATTA 28.57 31 108 N315 SA0009 seryl-tRNA synthetase serS SAUSA300_0009::70::98.57143::2.2E-10::+ SAR0009::70::98.57143::2.2E-10::+ SAS0009::70::98.57143::2.2E-10::+ SACOL0009::70::98.57143::2.2E-10::+ SAV0009::70::100.0::8.4E-11::+ MW0009::70::98.57143::2.2E-10::+ SA0009::70::100.0::8.4E-11::+ SA0009
9QSA00001_A_16 ATGCACTCGAAGAAGTGAGAAAAGGCTATTACCCAATTAAACGTGCGATTGACTTAGTATTAAGTATCGT 37.14 29 75 N315 SA0124 hypothetical protein SAV0129::70::100.0::2.0E-11::+ SA0124::70::100.0::2.0E-11::+ SA0124
9QSA00001_A_17 TTGGTATTGTGGCTTCGTCTCAAAACTTTAGTATTTTAGAAATTATCTTGTTATGTCTTGTTATATATGC 28.57 30 69 N315 SA0010 hypothetical protein SAUSA300_0010::70::98.57143::6.1E-11::+ SAR0010::70::97.14286::1.8E-10::+ SAS0010::70::98.57143::6.1E-11::+ SACOL0010::70::98.57143::6.1E-11::+ SAV0010::70::100.0::2.0E-11::+ MW0010::70::98.57143::6.1E-11::+ SA0010::70::100.0::2.0E-11::+ SA0010
9QSA00001_A_18 ATCTAGTTATCGAAAAATTAATGTCATGTATTACAGATAGCATTATTTGTGTTTCAGATTTCGATAAACA 25.71 32 141 N315 SA0125 hypothetical protein SAUSA300_0132::70::95.71428::1.4E-9::+ SAR0132::70::97.14286::5.3E-10::+ SAS0104::70::95.71428::1.4E-9::+ SACOL0115::70::95.71428::1.4E-9::+ SAV0130::70::100.0::7.7E-11::+ MW0104::70::95.71428::1.4E-9::+ SA0125::70::100.0::7.7E-11::+ SA0125
9QSA00001_A_19 TTTATCTATAATCACGCGTAGTTTAACTATTACAATTATTAGTGGGATTGTTATCATGGCAACATTACGA 30.0 31 94 N315 SAS001 hypothetical protein SAUSA300_0011::70::98.57143::8.2E-11::+ SAR0011::70::98.57143::8.2E-11::+ SAS0011::70::98.57143::8.2E-11::+ SACOL0011::70::98.57143::8.2E-11::+ SAV0011::70::100.0::3.2E-11::+ MW0011::70::98.57143::8.2E-11::+ SAS001::70::100.0::3.2E-11::+ SAS001
9QSA00001_A_2 TAGAAGATGTTGAAGGGGTTATGGCCATTGACGATATAGCTCAAGTCGAAGGTTTAGACATGATAGTCGA 41.43 30 86 N315 SA0118 hypothetical protein SAUSA300_0124::70::98.57143::9.7E-11::+ SAR0125::70::98.57143::9.7E-11::+ SAS0096::70::98.57143::9.7E-11::+ SACOL0106::70::98.57143::9.7E-11::+ SAV0122::70::100.0::3.5E-11::+ MW0095::70::98.57143::9.8E-11::+ SA0118::70::100.0::3.5E-11::+ SA0118
9QSA00001_A_20 ATATTACTTTGTTTTACCTTTTATAATATCAACTACTATTTATTCCAATTAAGCGACCTTGATGCCGTAC 28.57 31 84 N315 SA0126 hypothetical protein SAUSA300_0133::70::98.57143::2.1E-10::+ SAR0133::70::94.28571::3.8E-9::+ SAS0105::70::97.14286::5.6E-10::+ SACOL0116::70::98.57143::2.1E-10::+ SAV0131::70::100.0::8.2E-11::+ MW0105::70::97.14286::5.6E-10::+ SA0126::70::100.0::8.2E-11::+ SA0126
9QSA00001_A_21 CATATTTTTAAAAATTTAGAAACGAAAGTCTTAACGATGGGGTTCATAGATGATTTGCTATATCCGGACG 32.86 30 83 N315 SA0011 hypothetical protein SAUSA300_0012::70::94.28571::3.0E-9::+ SAR0012::70::92.85714::7.8E-9::+ SAS0012::70::94.28571::3.0E-9::+ SACOL0012::70::94.28571::3.0E-9::+ SAV0012::70::100.0::6.2E-11::+ MW0012::70::94.28571::3.0E-9::+ SA0011::70::100.0::6.2E-11::+ SA0011
9QSA00001_A_22 ACTATATGACTGCATTTTGGAATATTGTTAACTGGAAAAAAGTTGATGAATTATACCAAGCAGCAAAATA 28.57 31 112 N315 SA0128 superoxide dismutase sodM SAUSA300_0135::70::98.57143::4.5E-11::+ SAR0135::70::100.0::1.8E-11::+ SAS0107::70::100.0::1.8E-11::+ SACOL0118::70::98.57143::4.5E-11::+ SAV0133::70::100.0::1.8E-11::+ MW0107::70::100.0::1.8E-11::+ SA0128::70::100.0::1.8E-11::+ SA0128
9QSA00001_A_23 ATCATTACATTTTTAATCGTCTTAATTAACTTAATCGTTACATTTCCGGTTTTACGAAAATTTAAAATCG 24.29 34 121 N315 SA0012 hypothetical protein SAUSA300_0013::70::98.57143::1.5E-10::+ SAR0013::70::98.57143::1.6E-10::+ SAS0013::70::98.57143::1.6E-10::+ SACOL0013::70::98.57143::1.5E-10::+ SAV0013::70::100.0::6.2E-11::+ MW0013::70::98.57143::1.5E-10::+ SA0012::70::100.0::6.2E-11::+ SA0012
9QSA00001_A_24 TCATATGAGTCAACAAGACCATATGAATCAGAACACACACATGAACCAACAGCCACAAATACAACAAGGT 38.57 33 66 N315 SA0129 hypothetical protein SAUSA300_0136::70::95.71428::6.1E-10::+ SAS0108::70::95.71428::6.1E-10::+ SACOL0119::70::95.71428::6.1E-10::+ SAV0134::70::100.0::2.6E-11::+ MW0108::70::95.71428::6.1E-10::+ SA0129::70::100.0::2.6E-11::+ SA0129
9QSA00001_A_3 CCCGAAAAATTCTACACAGATCATGGAAGTGACTTTACTTCACATCATATGGAACAAGTCGCTATTGATT 37.14 30 104 N315 SAP014 hypothetical protein tnp VRA0051::70::100.0::9.3E-11::+ SAR1827::70::91.42857::2.8E-8::+ pSAS15::70::100.0::9.3E-11::+ SAP014::70::100.0::9.3E-11::+ SAP014
9QSA00001_A_5 TCAATAGACCATGGCTAACTATTATTATGGATGACTATAGTCGTGCAATTGCAGGCTATTTCTTAAGTTT 34.29 30 112 N315 SAP014 hypothetical protein tnp VRA0051::70::100.0::9.3E-11::+ SAR1827::70::94.28571::4.2E-9::+ pSAS15::70::100.0::9.3E-11::+ SAP014::70::100.0::9.3E-11::+ SAP014
9QSA00001_A_6 TTTGAAATTTATCGTTATAAGGACAATCCATATTCATTTGAAAAAGTTTCAATTTCGAGACAGGACACAA 28.57 32 104 N315 SA0119 hypothetical protein SAUSA300_0125::70::97.14286::5.4E-10::+ SAR0126::70::97.14286::5.4E-10::+ SAS0097::70::98.57143::2.1E-10::+ SACOL0107::70::97.14286::5.4E-10::+ SAV0123::70::100.0::7.9E-11::+ MW0096::70::98.57143::2.1E-10::+ SA0119::70::100.0::7.9E-11::+ SA0119
9QSA00001_A_7 CATTACCTATATTAACTGGTATCAAAATCGATGCGAAAGAACATGAAGTTATACTAACTGGTTCAGACTC 34.29 29 83 N315 SA0002 DNA polymerase III subunit beta dnaN SAUSA300_0002::70::98.57143::1.9E-10::+ SAR0002::70::97.14286::5.1E-10::+ SAS0002::70::98.57143::1.9E-10::+ SACOL0002::70::98.57143::1.9E-10::+ SAV0002::70::100.0::7.4E-11::+ MW0002::70::98.57143::1.9E-10::+ SA0002::70::100.0::7.4E-11::+ SA0002

Total number of rows: 5087

Table truncated, full table size 1499 Kbytes.




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Supplementary data files not provided
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