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Platform GPL10288 Query DataSets for GPL10288
Status Public on May 26, 2010
Title Affymetrix GeneChip Mouse Genome 430 2.0 Array [CDF: Mm_ENTREZG_11]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol This array is identical to GPL1261 but a custom, remapped CDF environment is used to extract data. The EntrezGene, version 11 custom CDF is linked below as a supplementary file.
 
Description For annotation of probes and summarization of signals from probes representing one gene, the MNBI custom CDF annotation file was used (EntrezGene, version 11.0.2, mouse4302mmentrezg.db_11.0.2.zip, at http://nugo-r.bioinformatics.nl/Packages_Prior_to_R2.10.html)
 
Submission date Apr 05, 2010
Last update date Jan 17, 2013
Contact name Marijana Radonjic
E-mail(s) marijana.radonjic@tno.nl
Organization name TNO
Street address Utrechtseweg 48
City Zeist
ZIP/Postal code 3704HE
Country Netherlands
 
Samples (30) GSM530347, GSM530348, GSM530349, GSM530350, GSM530351, GSM530352 
Series (2)
GSE21211 Fenofibrate increases VLDL-triglyceride production despite reducing plasma triglyceride levels in APOE*3-Leiden.CETP mice
GSE22940 PFOS and PFHxS decrease lipoprotein production
Relations
Alternative to GPL1261 (Alternative CDF [official])

Data table header descriptions
ID
ORF EntrezGene ID
description
gene name
Number of probes in the probeset
Entrez ID
unigene
Chromosome number
location on the chromosome
GO-BP identifiers
GO-BP descriptions
GO-MF identifiers
GO-MF descriptions
GO-CC identifiers
GO-CC descriptions

Data table
ID ORF description gene name Number of probes in the probeset Entrez ID unigene Chromosome number location on the chromosome GO-BP identifiers GO-BP descriptions GO-MF identifiers GO-MF descriptions GO-CC identifiers GO-CC descriptions
100009600_at 100009600 GATA-like 1 Glp1 10 100009600 Mm.476304 9 -20866836 GO:0000122 /// GO:0006350 /// GO:0006355 /// GO:0007275 /// GO:0007283 /// GO:0048599 negative regulation of transcription from RNA polymerase II promoter /// transcription /// regulation of transcription, DNA-dependent /// multicellular organismal development /// spermatogenesis /// oocyte development GO:0003677 /// GO:0003700 /// GO:0046872 /// GO:0008270 /// GO:0016564 /// GO:0043565 DNA binding /// transcription factor activity /// metal ion binding /// zinc ion binding /// transcription repressor activity /// sequence-specific DNA binding GO:0005634 nucleus
100017_at 100017 low density lipoprotein receptor adaptor protein 1 Ldlrap1 11 100017 Mm.475888 4 -134301326 GO:0006629 /// GO:0006897 /// GO:0008202 /// GO:0008203 /// GO:0042632 lipid metabolic process /// endocytosis /// steroid metabolic process /// cholesterol metabolic process /// cholesterol homeostasis GO:0005515 /// GO:0005102 /// GO:0004872 /// GO:0030276 protein binding /// receptor binding /// receptor activity /// clathrin binding GO:0005737 /// GO:0005769 cytoplasm /// early endosome
100019_at 100019 midasin homolog (yeast) Mdn1 12 100019 Mm.24627 4 32744093 NA NA GO:0000166 /// GO:0005524 nucleotide binding /// ATP binding NA NA
100034251_at 100034251 predicted gene, OTTMUSG00000000971 OTTMUSG00000000971 11 100034251 Mm.24097 11 83517557 NA NA NA NA NA NA
100036521_at 100036521 hypothetical gene LOC100036521 LOC100036521 11 100036521 Mm.458518 6 NA NA NA NA NA NA NA
100037258_at 100037258 DnaJ (Hsp40) homolog, subfamily C, member 3 Dnajc3 20 100037258 Mm.12616 14 119337208 GO:0006986 /// GO:0006469 response to unfolded protein /// negative regulation of protein kinase activity GO:0004860 /// GO:0005488 /// GO:0031072 protein kinase inhibitor activity /// binding /// heat shock protein binding GO:0005783 /// GO:0005737 endoplasmic reticulum /// cytoplasm
100038570_at 100038570 predicted gene, OTTMUSG00000003947 OTTMUSG00000003947 9 100038570 Mm.390349 11 NA GO:0007601 /// GO:0050896 visual perception /// response to stimulus NA NA GO:0016020 /// GO:0016021 /// GO:0005737 membrane /// integral to membrane /// cytoplasm
100038887_at 100038887 hypothetical protein LOC100038887 LOC100038887 19 100038887 Mm.153159 5 NA NA NA NA NA NA NA
100038959_at 100038959 predicted gene, 100038959 100038959 9 100038959 Mm.396101 9 NA NA NA NA NA NA NA
100039235_at 100039235 hypothetical protein LOC100039235 LOC100039235 5 100039235 Mm.411813 8 NA NA NA NA NA NA NA
100039284_at 100039284 predicted gene, 100039284 100039284 11 100039284 Mm.450678 10 NA NA NA NA NA NA NA
100039307_at 100039307 predicted gene, 100039307 100039307 8 100039307 Mm.387016 1 NA NA NA NA NA NA NA
100039359_at 100039359 hypothetical protein LOC100039359 LOC100039359 11 100039359 NA 5 NA NA NA NA NA NA NA
100039495_at 100039495 predicted gene, OTTMUSG00000025463 OTTMUSG00000025463 11 100039495 Mm.121014 6 NA NA NA NA NA NA NA
100039590_at 100039590 similar to transforming growth factor, beta receptor III (betaglycan, 300kDa) LOC100039590 4 100039590 Mm.439193 8 NA NA NA NA NA NA NA
100039599_at 100039599 hypothetical protein LOC100039599 LOC100039599 10 100039599 NA 15 NA NA NA NA NA NA NA
100039652_at 100039652 predicted gene, 100039652 100039652 4 100039652 NA Y NA NA NA NA NA NA NA
100039684_at 100039684 predicted gene, 100039684 100039684 6 100039684 Mm.387178 3 NA NA NA NA NA NA NA
100039773_at 100039773 similar to ATP synthase subunit e LOC100043912 6 100039773 NA 2 NA NA NA NA NA NA NA
100039795_at 100039795 similar to C1orf32 putative protein LOC100039795 3 100039795 Mm.445387 1 NA NA NA NA NA NA NA

Total number of rows: 11587

Table truncated, full table size 3966 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL10288_Mouse4302_Mm_ENTREZG_11.0.1.cdf.gz 6.2 Mb (ftp)(http) CDF

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