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Platform GPL10152 Query DataSets for GPL10152
Status Public on Mar 10, 2010
Title Agilent-021924 SurePrint G3 Human CGH Microarray 8x60K (Feature Number version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description SurePrint G3 Human CGH Microarray 8x60K

Arrays of this design have barcodes that begin with 16021924 or 2521924.

Data table annotations based on build hg18:NCBI36:Mar2006.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 09, 2010
Last update date Apr 23, 2013
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (858) GSM832764, GSM832765, GSM832766, GSM832767, GSM832768, GSM832769 
Series (29)
GSE33685 Array CGH analysis of multiple myeloma (MM) and MGUS, Sapporo and Hiroshima samples
GSE34649 Integrated genome and transcriptome sequencing identifies a novel case of hybrid and aggressive prostate cancer
GSE41188 High fidelity patient-derived xenografts for accelerating prostate cancer discovery and drug development (aCGH)
Relations
Alternative to GPL17052

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME Agilent Probe Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank or RefSeq Accession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
RANGE_GB RefSeq.version of chromosome (NBCI Build 36)
RANGE_START Start position (relative to the RANGE_GB accession)
RANGE_END End position (relative to the RANGE_GB accession)
CYTOBAND Cytoband
DESCRIPTION Description

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION RANGE_GB RANGE_START RANGE_END CYTOBAND DESCRIPTION
1 192 328 HsCGHBrightCorner pos
2 192 326 DarkCorner pos
3 192 324 DarkCorner pos
4 192 322 A_14_P128532 FALSE NM_001419 ELAVL1 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) ref|NM_001419 chr19:7974628-7974687 NC_000019.8 7974628 7974687 hs|p13.2 Homo sapiens ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) (ELAVL1), mRNA.
5 192 320 A_14_P105322 FALSE NM_003558 PIP5K1B phosphatidylinositol-4-phosphate 5-kinase, type I, beta ref|NM_003558 chr9:70791222-70791281 NC_000009.10 70791222 70791281 hs|q21.11 Homo sapiens phosphatidylinositol-4-phosphate 5-kinase, type I, beta (PIP5K1B), transcript variant 2, mRNA.
6 192 318 A_14_P128090 FALSE chr5:15085877-15085936 NC_000005.8 15085877 15085936 hs|p15.2
7 192 316 A_16_P02073591 FALSE chr9:19983767-19983826 NC_000009.10 19983767 19983826 hs|p21.3
8 192 314 A_14_P135539 FALSE NM_001101419 ZNF541 zinc finger protein 541 ref|NM_001101419 chr19:52739093-52739148 NC_000019.8 52739093 52739148 hs|q13.32 Homo sapiens zinc finger protein 541 (ZNF541), mRNA.
9 192 312 A_14_P118924 FALSE NM_015076 CDC2L6 cell division cycle 2-like 6 (CDK8-like) ref|NM_015076 chr6:111232868-111232927 NC_000006.10 111232868 111232927 hs|q21 Homo sapiens cell division cycle 2-like 6 (CDK8-like) (CDC2L6), mRNA.
10 192 310 A_16_P17264851 FALSE chr5:114766918-114766977 NC_000005.8 114766918 114766977 hs|q22.3
11 192 308 A_14_P129144 FALSE AF520801 gb|AF520801|gb|AY538274 chr6:10289217-10289276 NC_000006.10 10289217 10289276 hs|p24.3 Homo sapiens clone 10AP3 MRDS1 protein (MRDS1) mRNA, partial cds.
12 192 306 A_16_P38515598 FALSE chr8:103838802-103838861 NC_000008.9 103838802 103838861 hs|q22.3
13 192 304 A_14_P126756 FALSE NM_000836 GRIN2D glutamate receptor, ionotropic, N-methyl D-aspartate 2D ref|NM_000836 chr19:53632960-53633019 NC_000019.8 53632960 53633019 hs|q13.32 Homo sapiens glutamate receptor, ionotropic, N-methyl D-aspartate 2D (GRIN2D), mRNA.
14 192 302 A_16_P03384707 FALSE NM_017742 ZCCHC2 zinc finger, CCHC domain containing 2 ref|NM_017742 chr18:58366380-58366439 NC_000018.8 58366380 58366439 hs|q21.33 Homo sapiens zinc finger, CCHC domain containing 2 (ZCCHC2), mRNA.
15 192 300 A_14_P123652 FALSE chr10:107207747-107207806 NC_000010.9 107207747 107207806 hs|q25.1
16 192 298 A_14_P111489 FALSE NM_032142 CEP192 centrosomal protein 192kDa ref|NM_032142 chr18:13095047-13095103 NC_000018.8 13095047 13095103 hs|p11.21 Homo sapiens centrosomal protein 192kDa (CEP192), mRNA.
17 192 296 A_14_P126461 FALSE NM_021223 MYL7 myosin, light chain 7, regulatory ref|NM_021223 chr7:44144968-44145019 NC_000007.12 44144968 44145019 hs|p13 Homo sapiens myosin, light chain 7, regulatory (MYL7), mRNA.
18 192 294 A_14_P201543 FALSE chrX:49498502-49498561 NC_000023.9 49498502 49498561 hs|p11.23
19 192 292 A_14_P103232 FALSE chr2:229250832-229250891 NC_000002.10 229250832 229250891 hs|q36.3
20 192 290 A_14_P116743 FALSE chr10:119158873-119158932 NC_000010.9 119158873 119158932 hs|q26.11

Total number of rows: 62976

Table truncated, full table size 12324 Kbytes.




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