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    AT3G15940 UDP-Glycosyltransferase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820838, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT3G15940
    Gene description
    UDP-Glycosyltransferase superfamily protein
    Primary source
    Araport:AT3G15940
    Locus tag
    AT3G15940
    See related
    TAIR:AT3G15940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See AT3G15940 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (5393451..5396994, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Phox (PX) domain-containing protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene DNA topoisomerase-like protein Neighboring gene mismatched DNA binding / ATP binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001202977.2
    NM_112464.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 

    General protein information

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    Preferred Names
    UDP-Glycosyltransferase superfamily protein
    NP_001189906.1
    • UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G52420.1).
    NP_188215.1
    • UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G52420.1); Has 9778 Blast hits to 9756 proteins in 1676 species: Archae - 288; Bacteria - 7022; Metazoa - 45; Fungi - 51; Plants - 181; Viruses - 0; Other Eukaryotes - 2191 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5393451..5396994 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202977.2 → NP_001189906.1  UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189906.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VIV5, A0A5S9XD36, A0A654F7L8, Q9LSB5
      Conserved Domains (2) summary
      cd03801
      Location:237 → 691
      GT4_PimA-like; phosphatidyl-myo-inositol mannosyltransferase
      pfam16994
      Location:234 → 404
      Glyco_trans_4_5; Glycosyl-transferase family 4

    2. NM_112464.3 → NP_188215.1  UDP-Glycosyltransferase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188215.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VIV5, A0A5S9XD36, A0A654F7L8, Q9LSB5
      Conserved Domains (2) summary
      cd03801
      Location:237 → 691
      GT4_PimA-like; phosphatidyl-myo-inositol mannosyltransferase
      pfam16994
      Location:234 → 404
      Glyco_trans_4_5; Glycosyl-transferase family 4
    Nucleotide Protein
    Heading Accession and Version

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