AT2G30660 ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Gene symbol: AT2G30660
Gene description: ATP-dependent caseinolytic (Clp) protease/crotonase family protein
Primary source: Araport:AT2G30660
Locus tag: AT2G30660
See related: TAIR:AT2G30660
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T11J7.5; T11J7_5
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Genomic context

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See AT2G30660 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 13

Sequence:: Chromosome: 2; NC_003071.7 (13058250..13061675, complement)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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General gene information

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Homology

Orthologs from OrthoDB

NM_001336278.1

Supported by ESTs:

NM_128618.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables 3-hydroxyisobutyryl-CoA hydrolase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in valine catabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in mitochondrion	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: ATP-dependent caseinolytic (Clp) protease/crotonase family protein

NP_180624.2

ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: beta-hydroxyisobutyryl-CoA hydrolase 1 (TAIR:AT5G65940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

13058250..13061675 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_128618.4 → NP_180624.2 ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_180624.2

Status: REVIEWED

UniProtKB/Swiss-Prot

O49331, Q6NMB0

UniProtKB/TrEMBL

A0A178VLJ3, A0A5S9X2T9, A0A7G2EEC8

Conserved Domains (1) summary

cl23717
Location:1 → 375

crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...
NM_001336278.1 → NP_001324604.1 ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VLJ3, A0A1P8B0L8, A0A5S9X2T9