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    CG30116 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 37126, updated on 22-Aug-2024

    Summary

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    Official Symbol
    CG30116provided by FlyBase
    Primary source
    FLYBASE:FBgn0028496
    Locus tag
    Dmel_CG30116
    See related
    AllianceGenome:FB:FBgn0028496
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:GH04922; CG17671; CG5512; Dmel\CG30116
    Summary
    Is expressed in several structures, including embryonic/larval midgut; embryonic/larval nervous system; presumptive embryonic/larval system; ventral midline of embryo; and ventral sensory complex primordium. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See CG30116 in Genome Data Viewer
    Location:
    55C10-55D1; 2-85 cM
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (18456602..18498026, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (14344107..14385531, complement)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Dynein axonemal assembly factor 3 Neighboring gene roswell Neighboring gene Glutathione S transferase E11 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The requirement of IRE1 and XBP1 in resolving physiological stress during Drosophila development. Huang HW, et al. J Cell Sci, 2017 Sep 15. PMID 28775151, Free PMC Article
    2. Updates on ion and water transport by the Malpighian tubule. Dow JAT, et al. Curr Opin Insect Sci, 2021 Oct. PMID 33705976, Free PMC Article
    3. Gene expression profiling of the developing Drosophila CNS midline cells. Kearney JB, et al. Dev Biol, 2004 Nov 15. PMID 15501232, Free PMC Article
    4. circRNA biogenesis competes with pre-mRNA splicing. Ashwal-Fluss R, et al. Mol Cell, 2014 Oct 2. PMID 25242144
    5. The genetic basis for variation in olfactory behavior in Drosophila melanogaster. Arya GH, et al. Chem Senses, 2015 May. PMID 25687947, Free PMC Article

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG30116-PA
    CG30116-PB
    CG30116-PC
    CG30116-PD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      18456602..18498026 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_137493.3 → NP_611337.2  uncharacterized protein Dmel_CG30116, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611337.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0E930, Q6AWF2
      Related
      FBpp0085898
      Conserved Domains (4) summary
      COG2319
      Location:1022 → 1484
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:1248 → 1502
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam13191
      Location:359 → 505
      AAA_16; AAA ATPase domain
      sd00039
      Location:1216 → 1252
      7WD40; WD40 repeat [structural motif]

    2. NM_137494.2 → NP_611338.1  uncharacterized protein Dmel_CG30116, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611338.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0E930, Q6AWF2
      Related
      FBpp0085900
      Conserved Domains (4) summary
      COG2319
      Location:1022 → 1484
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:1248 → 1502
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam13191
      Location:359 → 505
      AAA_16; AAA ATPase domain
      sd00039
      Location:1216 → 1252
      7WD40; WD40 repeat [structural motif]

    3. NM_166291.2 → NP_725798.1  uncharacterized protein Dmel_CG30116, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_725798.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1ZB92, Q6AWF2
      Related
      FBpp0085897
      Conserved Domains (4) summary
      COG2319
      Location:1022 → 1484
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:1248 → 1502
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam13191
      Location:359 → 505
      AAA_16; AAA ATPase domain
      sd00039
      Location:1216 → 1252
      7WD40; WD40 repeat [structural motif]

    4. NM_166292.2 → NP_725799.1  uncharacterized protein Dmel_CG30116, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_725799.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1ZB93, Q6AWF2
      Related
      FBpp0085899
      Conserved Domains (4) summary
      COG2319
      Location:1022 → 1484
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:1248 → 1502
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam13191
      Location:359 → 505
      AAA_16; AAA ATPase domain
      sd00039
      Location:1216 → 1252
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1ZB92 A1ZB92
    A1ZB93 A1ZB93
    Q0E930 Q0E930
    Q6AWF2 Q6AWF2
    Q9U4H2 Q9U4H2

    Gene LinkOut

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