|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
991-1491 |
1.64e-65 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 228.26 E-value: 1.64e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 991 AAGANNTLIISSSEDASIAITDLASGKLRHRITHHRGPVSGIVVAGACDVLISGGLDRTICVWDLDNFTLLNTMQ-MTSA 1069
Cdd:COG2319 1 ALSADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLgHTAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1070 VLRIDISWNSVFLLALCEDNALYVRTLATGKELHTLKGHKSKIRSISIGKDSQRCVVGCDDTRALIYDMHAGKLVRSLPP 1149
Cdd:COG2319 81 VLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1150 NPGPVTAVhamdnddflvtvggnkitfySFrneelyvnpysrhprrkrslkrhaqaqrspsttlppitcfdlSRDSQQMA 1229
Cdd:COG2319 161 HSGAVTSV--------------------AF------------------------------------------SPDGKLLA 178
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1230 IASGRH-VHLMRINTPEYQCTLEGHTAGVSCLKFAPNGEFLATGSEDRLVHIWNLALGEICNSFKGHTAPVVKVVVLMDS 1308
Cdd:COG2319 179 SGSDDGtVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDG 258
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1309 LRVISTDRDSMLLVWMAHSGNLLQTIQGpykslsvtnnmrfavstngdntlkiwsltqedekysvsHSDEITCFEISADS 1388
Cdd:COG2319 259 RLLASGSADGTVRLWDLATGELLRTLTG--------------------------------------HSGGVNSVAFSPDG 300
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1389 VHIISGSRDMSLKVWQATGGKLSQVLVGHSDAVTCVAVSVTNKTqVLSGSKDMNLILWDLLTGEEVHTLAGHLGPVIGVK 1468
Cdd:COG2319 301 KLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKT-LASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVA 379
|
490 500
....*....|....*....|...
gi 24655069 1469 VSADGSTAVSGSDDKTLIVWETK 1491
Cdd:COG2319 380 FSPDGRTLASGSADGTVRLWDLA 402
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
1248-1502 |
9.85e-59 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 204.49 E-value: 9.85e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1248 CTLEGHTAGVSCLKFAPNGEFLATGSEDRLVHIWNLALGEICNSFKGHTAPVVKVVVLMDSLRVISTDRDSMLLVWMAHS 1327
Cdd:cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1328 GNLLQTIQG---PYKSLSVTNNMRFAVSTNGDNTLKIWSLTQEDEKYSV-SHSDEITCFEISADSVHIISGSRDMSLKVW 1403
Cdd:cd00200 83 GECVRTLTGhtsYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLrGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1404 QATGGKLSQVLVGHSDAVTCVAVSvTNKTQVLSGSKDMNLILWDLLTGEEVHTLAGHLGPVIGVKVSADGSTAVSGSDDK 1483
Cdd:cd00200 163 DLRTGKCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241
|
250
....*....|....*....
gi 24655069 1484 TLIVWETKRGLALTSLQMH 1502
Cdd:cd00200 242 TIRVWDLRTGECVQTLSGH 260
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
897-1057 |
8.14e-26 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 111.93 E-value: 8.14e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 897 TGCIRAVWLAPSKQHLILATSSGDVQQWHIMSNSLDHIFKGHTAAVTCLLVAPqsDSELLLTGSEDATVLVWHVGLRERR 976
Cdd:COG2319 246 SGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSP--DGKLLASGSDDGTVRLWDLATGKLL 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 977 AHIKnAHTAPITGVAAGANNTLIISSSEDASIAITDLASGKLRHRITHHRGPVSGIVVAGACDVLISGGLDRTICVWDLD 1056
Cdd:COG2319 324 RTLT-GHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDLA 402
|
.
gi 24655069 1057 N 1057
Cdd:COG2319 403 T 403
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
1243-1282 |
9.57e-09 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 52.31 E-value: 9.57e-09
10 20 30 40
....*....|....*....|....*....|....*....|
gi 24655069 1243 TPEYQCTLEGHTAGVSCLKFAPNGEFLATGSEDRLVHIWN 1282
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
1249-1282 |
1.71e-08 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 51.58 E-value: 1.71e-08
10 20 30
....*....|....*....|....*....|....
gi 24655069 1249 TLEGHTAGVSCLKFAPNGEFLATGSEDRLVHIWN 1282
Cdd:pfam00400 6 TLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
1239-1515 |
2.72e-05 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 48.93 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1239 MRINTPEYQCTLEGHTAGVSCLKFAPNGEFLATGSEDRLVHIWNlalgeiCNSfkghtapvvkvvvlmdslrVISTDRD- 1317
Cdd:PLN00181 468 LRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFE------CES-------------------IIKDGRDi 522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1318 SMLLVWMAHSGNLLQTIQGPYKSLSVTnnmrfavSTNGDNTLKIWSLT--------QEDEK--YSVSHSdeitcfeiSAD 1387
Cdd:PLN00181 523 HYPVVELASRSKLSGICWNSYIKSQVA-------SSNFEGVVQVWDVArsqlvtemKEHEKrvWSIDYS--------SAD 587
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1388 SVHIISGSRDMSLKVWQATGGkLSQVLVGHSDAVTCVAVSVTNKTQVLSGSKDMNLILWDLLTGE-EVHTLAGHLGPVIG 1466
Cdd:PLN00181 588 PTLLASGSDDGSVKLWSINQG-VSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKlPLCTMIGHSKTVSY 666
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 24655069 1467 VKVsADGSTAVSGSDDKTLIVWETKRGLA------LTSLQMHVPFTHFdISLEVS 1515
Cdd:PLN00181 667 VRF-VDSSTLVSSSTDNTLKLWDLSMSISginetpLHSFMGHTNVKNF-VGLSVS 719
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
928-969 |
3.11e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 42.68 E-value: 3.11e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 24655069 928 SNSLDHIFKGHTAAVTCLLVAPqsDSELLLTGSEDATVLVWH 969
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSP--DGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
933-968 |
7.35e-05 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 41.56 E-value: 7.35e-05
10 20 30
....*....|....*....|....*....|....*.
gi 24655069 933 HIFKGHTAAVTCLLVAPqsDSELLLTGSEDATVLVW 968
Cdd:pfam00400 5 KTLEGHTGSVTSLAFSP--DGKLLASGSDDGTVKVW 38
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
991-1491 |
1.64e-65 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 228.26 E-value: 1.64e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 991 AAGANNTLIISSSEDASIAITDLASGKLRHRITHHRGPVSGIVVAGACDVLISGGLDRTICVWDLDNFTLLNTMQ-MTSA 1069
Cdd:COG2319 1 ALSADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLgHTAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1070 VLRIDISWNSVFLLALCEDNALYVRTLATGKELHTLKGHKSKIRSISIGKDSQRCVVGCDDTRALIYDMHAGKLVRSLPP 1149
Cdd:COG2319 81 VLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1150 NPGPVTAVhamdnddflvtvggnkitfySFrneelyvnpysrhprrkrslkrhaqaqrspsttlppitcfdlSRDSQQMA 1229
Cdd:COG2319 161 HSGAVTSV--------------------AF------------------------------------------SPDGKLLA 178
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1230 IASGRH-VHLMRINTPEYQCTLEGHTAGVSCLKFAPNGEFLATGSEDRLVHIWNLALGEICNSFKGHTAPVVKVVVLMDS 1308
Cdd:COG2319 179 SGSDDGtVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDG 258
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1309 LRVISTDRDSMLLVWMAHSGNLLQTIQGpykslsvtnnmrfavstngdntlkiwsltqedekysvsHSDEITCFEISADS 1388
Cdd:COG2319 259 RLLASGSADGTVRLWDLATGELLRTLTG--------------------------------------HSGGVNSVAFSPDG 300
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1389 VHIISGSRDMSLKVWQATGGKLSQVLVGHSDAVTCVAVSVTNKTqVLSGSKDMNLILWDLLTGEEVHTLAGHLGPVIGVK 1468
Cdd:COG2319 301 KLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKT-LASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVA 379
|
490 500
....*....|....*....|...
gi 24655069 1469 VSADGSTAVSGSDDKTLIVWETK 1491
Cdd:COG2319 380 FSPDGRTLASGSADGTVRLWDLA 402
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
1190-1502 |
1.34e-60 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 214.00 E-value: 1.34e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1190 SRHPRRKRSLKRHAQAQRSPSTTLPPITCFDLSRDSQQMAIASGRH-VHLMRINTPEYQCTLEGHTAGVSCLKFAPNGEF 1268
Cdd:COG2319 55 AGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGtVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKT 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1269 LATGSEDRLVHIWNLALGEICNSFKGHTAPVVKVVVLMDSLRVISTDRDSMLLVWMAHSGNLLQTIQGPYK---SLSVTN 1345
Cdd:COG2319 135 LASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGavrSVAFSP 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1346 NMRFAVSTNGDNTLKIWSLTQEDEKYSVS-HSDEITCFEISADSVHIISGSRDMSLKVWQATGGKLSQVLVGHSDAVTCV 1424
Cdd:COG2319 215 DGKLLASGSADGTVRLWDLATGKLLRTLTgHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSV 294
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24655069 1425 AVSVTNKTqVLSGSKDMNLILWDLLTGEEVHTLAGHLGPVIGVKVSADGSTAVSGSDDKTLIVWETKRGLALTSLQMH 1502
Cdd:COG2319 295 AFSPDGKL-LASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGH 371
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
1248-1502 |
9.85e-59 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 204.49 E-value: 9.85e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1248 CTLEGHTAGVSCLKFAPNGEFLATGSEDRLVHIWNLALGEICNSFKGHTAPVVKVVVLMDSLRVISTDRDSMLLVWMAHS 1327
Cdd:cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1328 GNLLQTIQG---PYKSLSVTNNMRFAVSTNGDNTLKIWSLTQEDEKYSV-SHSDEITCFEISADSVHIISGSRDMSLKVW 1403
Cdd:cd00200 83 GECVRTLTGhtsYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLrGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1404 QATGGKLSQVLVGHSDAVTCVAVSvTNKTQVLSGSKDMNLILWDLLTGEEVHTLAGHLGPVIGVKVSADGSTAVSGSDDK 1483
Cdd:cd00200 163 DLRTGKCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241
|
250
....*....|....*....
gi 24655069 1484 TLIVWETKRGLALTSLQMH 1502
Cdd:cd00200 242 TIRVWDLRTGECVQTLSGH 260
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
1215-1489 |
2.52e-56 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 197.56 E-value: 2.52e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1215 PITCFDLSRDSQQMAIASG-RHVHLMRINTPEYQCTLEGHTAGVSCLKFAPNGEFLATGSEDRLVHIWNLALGEICNSFK 1293
Cdd:cd00200 11 GVTCVAFSPDGKLLATGSGdGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1294 GHTAPVVKVVVLMDSLRVISTDRDSMLLVWMAHSGNLLQTIQG---PYKSLSVTNNMRFAVSTNGDNTLKIWSLTQEDEK 1370
Cdd:cd00200 91 GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGhtdWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1371 YS-VSHSDEITCFEISADSVHIISGSRDMSLKVWQATGGKLSQVLVGHSDAVTCVAVSVTNKTqVLSGSKDMNLILWDLL 1449
Cdd:cd00200 171 ATlTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL-LASGSEDGTIRVWDLR 249
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 24655069 1450 TGEEVHTLAGHLGPVIGVKVSADGSTAVSGSDDKTLIVWE 1489
Cdd:cd00200 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
822-1284 |
6.17e-54 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 194.74 E-value: 6.17e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 822 SSDVLTRDPMQLGSQLISWLRPISEHDDDDNSLLSMTVRSATAWCDGYAVPLLVPLTGWLPAPLPSQIRTMTVSGTGCIR 901
Cdd:COG2319 3 SADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 902 AVWLAPSKQHLILATSSGDVQQWHIMSNSLDHIFKGHTAAVTCLLVAPqsDSELLLTGSEDATVLVWHVGLRERRAHIKn 981
Cdd:COG2319 83 SVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSP--DGKTLASGSADGTVRLWDLATGKLLRTLT- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 982 AHTAPITGVAAGANNTLIISSSEDASIAITDLASGKLRHRITHHRGPVSGIVVAGACDVLISGGLDRTICVWDLDNFTLL 1061
Cdd:COG2319 160 GHSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1062 NTMQM-TSAVLRIDISWNSVFLLALCEDNALYVRTLATGKELHTLKGHKSKIRSISIGKDSQRCVVGCDDTRALIYDMHA 1140
Cdd:COG2319 240 RTLTGhSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLAT 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1141 GKLVRSLPPNPGPVTAVhamdnddflvtvggnkitfysfrneelyvnpysrhprrkrslkrhaqaqrspsttlppitcfD 1220
Cdd:COG2319 320 GKLLRTLTGHTGAVRSV--------------------------------------------------------------A 337
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24655069 1221 LSRDSQQMAIASG-RHVHLMRINTPEYQCTLEGHTAGVSCLKFAPNGEFLATGSEDRLVHIWNLA 1284
Cdd:COG2319 338 FSPDGKTLASGSDdGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDLA 402
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
1190-1503 |
8.72e-53 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 191.28 E-value: 8.72e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1190 SRHPRRKRSLKRHAQAQRSPSTTLPPITCFDLSRDSQQMAIASGRHVHLMRINTPEYQCTLEGHTAGVSCLKFAPNGEFL 1269
Cdd:COG2319 14 ADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1270 ATGSEDRLVHIWNLALGEICNSFKGHTAPVVKVVVLMDSLRVISTDRDSMLLVWMAHSGNLLQTIQG---PYKSLSVTNN 1346
Cdd:COG2319 94 ASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGhsgAVTSVAFSPD 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1347 MRFAVSTNGDNTLKIWSLTQEDEKYSVS-HSDEITCFEISADSVHIISGSRDMSLKVWQATGGKLSQVLVGHSDAVTCVA 1425
Cdd:COG2319 174 GKLLASGSDDGTVRLWDLATGKLLRTLTgHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSVA 253
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 24655069 1426 VSVTNKTqVLSGSKDMNLILWDLLTGEEVHTLAGHLGPVIGVKVSADGSTAVSGSDDKTLIVWETKRGLALTSLQMHV 1503
Cdd:COG2319 254 FSPDGRL-LASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHT 330
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
933-1282 |
1.39e-48 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 175.22 E-value: 1.39e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 933 HIFKGHTAAVTCllVAPQSDSELLLTGSEDATVLVWHVGLRERRAHIKNaHTAPITGVAAGANNTLIISSSEDASIAITD 1012
Cdd:cd00200 3 RTLKGHTGGVTC--VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRLWD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1013 LASGKLRHRITHHRGPVSGIVVAGACDVLISGGLDRTICVWDLDNFTLLNTMQM-TSAVLRIDISWNSVFLLALCEDNAL 1091
Cdd:cd00200 80 LETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGhTDWVNSVAFSPDGTFVASSSQDGTI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1092 YVRTLATGKELHTLKGHKSKIRSISIGKDSQRCVVGCDDTRALIYDMHAGKLVRSLPPNPGPVTAVHAMDNDDFLVTVGG 1171
Cdd:cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1172 NkitfysfrneelyvnpysrhprrkrslkrhaqaqrspsttlppitcfdlsrdsqqmaiasgRHVHLMRINTPEYQCTLE 1251
Cdd:cd00200 240 D-------------------------------------------------------------GTIRVWDLRTGECVQTLS 258
|
330 340 350
....*....|....*....|....*....|.
gi 24655069 1252 GHTAGVSCLKFAPNGEFLATGSEDRLVHIWN 1282
Cdd:cd00200 259 GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
820-1173 |
1.08e-47 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 176.64 E-value: 1.08e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 820 RKSSDVLTRDPMQLGSQLISWLRPISEHDDDDNSLLSM--TVRSATAWCDGyAVPLLVPLTGWLPAPLPSQirtmtvsgT 897
Cdd:COG2319 50 RLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSpdGRLLASASADG-TVRLWDLATGLLLRTLTGH--------T 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 898 GCIRAVWLAPSKQHLILATSSGDVQQWHIMSNSLDHIFKGHTAAVTCLLVAPqsDSELLLTGSEDATVLVWHVGLRERRA 977
Cdd:COG2319 121 GAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSP--DGKLLASGSDDGTVRLWDLATGKLLR 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 978 HIKnAHTAPITGVAAGANNTLIISSSEDASIAITDLASGKLRHRITHHRGPVSGIVVAGACDVLISGGLDRTICVWDLDN 1057
Cdd:COG2319 199 TLT-GHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLAT 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1058 FTLLNTMQM-TSAVLRIDISWNSVFLLALCEDNALYVRTLATGKELHTLKGHKSKIRSISIGKDSQRCVVGCDDTRALIY 1136
Cdd:COG2319 278 GELLRTLTGhSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLW 357
|
330 340 350
....*....|....*....|....*....|....*..
gi 24655069 1137 DMHAGKLVRSLPPNPGPVTAVHAMDNDDFLVTVGGNK 1173
Cdd:COG2319 358 DLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADG 394
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
1262-1502 |
2.60e-39 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 151.99 E-value: 2.60e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1262 FAPNGEFLATGSEDRLVHIWNLALGEICNSFKGHTAPVVKVVVLMDSLRVISTDRDSMLLVWMAHSGNLLQTIQG---PY 1338
Cdd:COG2319 2 LSADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGhtaAV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1339 KSLSVTNNMRFAVSTNGDNTLKIWSL-TQEDEKYSVSHSDEITCFEISADSVHIISGSRDMSLKVWQATGGKLSQVLVGH 1417
Cdd:COG2319 82 LSVAFSPDGRLLASASADGTVRLWDLaTGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGH 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1418 SDAVTCVAVSVTNKTqVLSGSKDMNLILWDLLTGEEVHTLAGHLGPVIGVKVSADGSTAVSGSDDKTLIVWETKRGLALT 1497
Cdd:COG2319 162 SGAVTSVAFSPDGKL-LASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLR 240
|
....*
gi 24655069 1498 SLQMH 1502
Cdd:COG2319 241 TLTGH 245
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
897-1137 |
1.31e-35 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 137.85 E-value: 1.31e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 897 TGCIRAV-WLAPSKQhliLATSSGD--VQQWHIMSNSLDHIFKGHTAAVTCLLVAPqsDSELLLTGSEDATVLVWHVGLR 973
Cdd:cd00200 51 TGPVRDVaASADGTY---LASGSSDktIRLWDLETGECVRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKVWDVETG 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 974 ERRAHIKnAHTAPITGVAAGANNTLIISSSEDASIAITDLASGKLRHRITHHRGPVSGIVVAGACDVLISGGLDRTICVW 1053
Cdd:cd00200 126 KCLTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1054 DLDNFTLLNTMQ-MTSAVLRIDISWNSVFLLALCEDNALYVRTLATGKELHTLKGHKSKIRSISIGKDSQRCVVGCDDTR 1132
Cdd:cd00200 205 DLSTGKCLGTLRgHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGT 284
|
....*
gi 24655069 1133 ALIYD 1137
Cdd:cd00200 285 IRIWD 289
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
905-1174 |
2.78e-35 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 137.08 E-value: 2.78e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 905 LAPSKQHLILATSSGD--VQQWHIMSNSLDHIFKGHTAAVTCllVAPQSDSELLLTGSEDATVLVWHVGLRERRAHIKnA 982
Cdd:cd00200 15 VAFSPDGKLLATGSGDgtIKVWDLETGELLRTLKGHTGPVRD--VAASADGTYLASGSSDKTIRLWDLETGECVRTLT-G 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 983 HTAPITGVAAGANNTLIISSSEDASIAITDLASGKLRHRITHHRGPVSGIVVAGACDVLISGGLDRTICVWDLDNFTLLN 1062
Cdd:cd00200 92 HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1063 TMQM-TSAVLRIDISWNSVFLLALCEDNALYVRTLATGKELHTLKGHKSKIRSISIGKDSQRCVVGCDDTRALIYDMHAG 1141
Cdd:cd00200 172 TLTGhTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251
|
250 260 270
....*....|....*....|....*....|...
gi 24655069 1142 KLVRSLPPNPGPVTAVHAMDNDDFLVTVGGNKI 1174
Cdd:cd00200 252 ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGT 284
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
897-1057 |
8.14e-26 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 111.93 E-value: 8.14e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 897 TGCIRAVWLAPSKQHLILATSSGDVQQWHIMSNSLDHIFKGHTAAVTCLLVAPqsDSELLLTGSEDATVLVWHVGLRERR 976
Cdd:COG2319 246 SGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFSP--DGKLLASGSDDGTVRLWDLATGKLL 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 977 AHIKnAHTAPITGVAAGANNTLIISSSEDASIAITDLASGKLRHRITHHRGPVSGIVVAGACDVLISGGLDRTICVWDLD 1056
Cdd:COG2319 324 RTLT-GHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDLA 402
|
.
gi 24655069 1057 N 1057
Cdd:COG2319 403 T 403
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
1410-1502 |
6.59e-17 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 83.15 E-value: 6.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1410 LSQVLVGHSDAVTCVAVSVTNKTqVLSGSKDMNLILWDLLTGEEVHTLAGHLGPVIGVKVSADGSTAVSGSDDKTLIVWE 1489
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79
|
90
....*....|...
gi 24655069 1490 TKRGLALTSLQMH 1502
Cdd:cd00200 80 LETGECVRTLTGH 92
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
1243-1282 |
9.57e-09 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 52.31 E-value: 9.57e-09
10 20 30 40
....*....|....*....|....*....|....*....|
gi 24655069 1243 TPEYQCTLEGHTAGVSCLKFAPNGEFLATGSEDRLVHIWN 1282
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
1249-1282 |
1.71e-08 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 51.58 E-value: 1.71e-08
10 20 30
....*....|....*....|....*....|....
gi 24655069 1249 TLEGHTAGVSCLKFAPNGEFLATGSEDRLVHIWN 1282
Cdd:pfam00400 6 TLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| NBCH_WD40 |
pfam20426 |
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at ... |
1354-1485 |
7.58e-08 |
|
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at the C-terminus of neurobeachin-like proteins.
Pssm-ID: 466575 [Multi-domain] Cd Length: 350 Bit Score: 56.23 E-value: 7.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1354 NGDNTLKIWSLTQEDEKYSVS-HSDEITCFEISADSVHIISGSRDMSLKVWQATGGKLSQ-------------------- 1412
Cdd:pfam20426 101 NWENSFQVISLNDGRMVQSIRqHKDVVSCVAVTSDGSILATGSYDTTVMVWEVLRGRSSEkrsrntqtefprkdhviaet 180
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 24655069 1413 ---VLVGHSDAVTCVAVSVTNKTqVLSGSKDMNLILWDLLTGEEVHTLAGHLG-PVIGVKVSADGSTAVSGSDDKTL 1485
Cdd:pfam20426 181 pfhILCGHDDIITCLYVSVELDI-VISGSKDGTCIFHTLREGRYVRSIRHPSGcPLSKLVASRHGRIVLYADDDLSL 256
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
1450-1489 |
6.27e-07 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 47.31 E-value: 6.27e-07
10 20 30 40
....*....|....*....|....*....|....*....|
gi 24655069 1450 TGEEVHTLAGHLGPVIGVKVSADGSTAVSGSDDKTLIVWE 1489
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
1451-1489 |
5.39e-06 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 44.64 E-value: 5.39e-06
10 20 30
....*....|....*....|....*....|....*....
gi 24655069 1451 GEEVHTLAGHLGPVIGVKVSADGSTAVSGSDDKTLIVWE 1489
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
1408-1447 |
2.58e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 42.68 E-value: 2.58e-05
10 20 30 40
....*....|....*....|....*....|....*....|
gi 24655069 1408 GKLSQVLVGHSDAVTCVAVSvTNKTQVLSGSKDMNLILWD 1447
Cdd:smart00320 2 GELLKTLKGHTGPVTSVAFS-PDGKYLASGSDDGTIKLWD 40
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
1239-1515 |
2.72e-05 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 48.93 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1239 MRINTPEYQCTLEGHTAGVSCLKFAPNGEFLATGSEDRLVHIWNlalgeiCNSfkghtapvvkvvvlmdslrVISTDRD- 1317
Cdd:PLN00181 468 LRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFE------CES-------------------IIKDGRDi 522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1318 SMLLVWMAHSGNLLQTIQGPYKSLSVTnnmrfavSTNGDNTLKIWSLT--------QEDEK--YSVSHSdeitcfeiSAD 1387
Cdd:PLN00181 523 HYPVVELASRSKLSGICWNSYIKSQVA-------SSNFEGVVQVWDVArsqlvtemKEHEKrvWSIDYS--------SAD 587
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1388 SVHIISGSRDMSLKVWQATGGkLSQVLVGHSDAVTCVAVSVTNKTQVLSGSKDMNLILWDLLTGE-EVHTLAGHLGPVIG 1466
Cdd:PLN00181 588 PTLLASGSDDGSVKLWSINQG-VSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKlPLCTMIGHSKTVSY 666
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 24655069 1467 VKVsADGSTAVSGSDDKTLIVWETKRGLA------LTSLQMHVPFTHFdISLEVS 1515
Cdd:PLN00181 667 VRF-VDSSTLVSSSTDNTLKLWDLSMSISginetpLHSFMGHTNVKNF-VGLSVS 719
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
928-969 |
3.11e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 42.68 E-value: 3.11e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 24655069 928 SNSLDHIFKGHTAAVTCLLVAPqsDSELLLTGSEDATVLVWH 969
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSP--DGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
1015-1054 |
4.26e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 42.30 E-value: 4.26e-05
10 20 30 40
....*....|....*....|....*....|....*....|
gi 24655069 1015 SGKLRHRITHHRGPVSGIVVAGACDVLISGGLDRTICVWD 1054
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| ANAPC4_WD40 |
pfam12894 |
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped ... |
1082-1162 |
5.12e-05 |
|
Anaphase-promoting complex subunit 4 WD40 domain; Apc4 contains an N-terminal propeller-shaped WD40 domain.The N-terminus of Afi1 serves to stabilize the union between Apc4 and Apc5, both of which lie towards the bottom-front of the APC,
Pssm-ID: 403945 [Multi-domain] Cd Length: 91 Bit Score: 43.42 E-value: 5.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1082 LLALC-EDNALYVRTLaTGKELHTL--KGHKSKIRSISIGKDSQRCVVGCDDTRALIYDMHAGKLVRSLPPNPGPVTAVH 1158
Cdd:pfam12894 9 LIALAtEDGELLLHRL-NWQRVWTLspDKEDLEVTSLAWRPDGKLLAVGYSDGTVRLLDAENGKIVHHFSAGSDLITCLG 87
|
....
gi 24655069 1159 AMDN 1162
Cdd:pfam12894 88 WGEN 91
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
1408-1447 |
6.28e-05 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 41.56 E-value: 6.28e-05
10 20 30 40
....*....|....*....|....*....|....*....|
gi 24655069 1408 GKLSQVLVGHSDAVTCVAVSvTNKTQVLSGSKDMNLILWD 1447
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFS-PDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
933-968 |
7.35e-05 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 41.56 E-value: 7.35e-05
10 20 30
....*....|....*....|....*....|....*.
gi 24655069 933 HIFKGHTAAVTCLLVAPqsDSELLLTGSEDATVLVW 968
Cdd:pfam00400 5 KTLEGHTGSVTSLAFSP--DGKLLASGSDDGTVKVW 38
|
|
| NBCH_WD40 |
pfam20426 |
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at ... |
1381-1500 |
1.21e-04 |
|
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at the C-terminus of neurobeachin-like proteins.
Pssm-ID: 466575 [Multi-domain] Cd Length: 350 Bit Score: 46.22 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1381 CF---EISADSVHIISGSRDMSLKVWQATGGKLSQVLVGHSDAVTCVAVSvTNKTQVLSGSKDMNLILWDLLTGEE---- 1453
Cdd:pfam20426 84 CFatlQTPSENFLISCGNWENSFQVISLNDGRMVQSIRQHKDVVSCVAVT-SDGSILATGSYDTTVMVWEVLRGRSsekr 162
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 24655069 1454 -------------------VHTLAGHLGPVIGVKVSADGSTAVSGSDDKTLIVWETKRGLALTSLQ 1500
Cdd:pfam20426 163 srntqtefprkdhviaetpFHILCGHDDIITCLYVSVELDIVISGSKDGTCIFHTLREGRYVRSIR 228
|
|
| YncE |
COG3391 |
DNA-binding beta-propeller fold protein YncE [General function prediction only]; |
959-1172 |
1.41e-04 |
|
DNA-binding beta-propeller fold protein YncE [General function prediction only];
Pssm-ID: 442618 [Multi-domain] Cd Length: 237 Bit Score: 45.46 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 959 GSEDATVLVWHVGLRERRAHIKNAHTAPITGVAAGANNTLIISSSEDASIAITDLASGKLRHRITHHRGPvSGIVVAGAc 1038
Cdd:COG3391 43 GVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLYVANSGSGRVSVIDLATGKVVATIPVGGGP-RGLAVDPD- 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1039 dvlisgglDRTICVWDLDNftllntmqmtSAVLRIDISWNSVfllalcednalyVRTLATGKELHtlkghkskirSISIG 1118
Cdd:COG3391 121 --------GGRLYVADSGN----------GRVSVIDTATGKV------------VATIPVGAGPH----------GIAVD 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 24655069 1119 KDSQRCVVGCDDTRAL-----IYDMHAGKLVRSLPPNPGPVTAVHAMDNDDFLVTVGGN 1172
Cdd:COG3391 161 PDGKRLYVANSGSNTVsvivsVIDTATGKVVATIPVGGGPVGVAVSPDGRRLYVANRGS 219
|
|
| NBCH_WD40 |
pfam20426 |
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at ... |
938-1035 |
1.58e-04 |
|
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at the C-terminus of neurobeachin-like proteins.
Pssm-ID: 466575 [Multi-domain] Cd Length: 350 Bit Score: 45.83 E-value: 1.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 938 HTAAVTCLLVApqSDSELLLTGSEDATVLVWHVgLR----ERRA-------------------HIKNAHTAPITGVAAGA 994
Cdd:pfam20426 123 HKDVVSCVAVT--SDGSILATGSYDTTVMVWEV-LRgrssEKRSrntqtefprkdhviaetpfHILCGHDDIITCLYVSV 199
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 24655069 995 NNTLIISSSEDASIAITDLASGKLRHRITHHRG-PVSGIVVA 1035
Cdd:pfam20426 200 ELDIVISGSKDGTCIFHTLREGRYVRSIRHPSGcPLSKLVAS 241
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
1016-1054 |
2.34e-04 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 40.02 E-value: 2.34e-04
10 20 30
....*....|....*....|....*....|....*....
gi 24655069 1016 GKLRHRITHHRGPVSGIVVAGACDVLISGGLDRTICVWD 1054
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
1098-1137 |
4.21e-04 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 39.22 E-value: 4.21e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 24655069 1098 TGKELHTLKGHKSKIRSISIGKDSQRCVVGCDDTRALIYD 1137
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
1099-1137 |
7.55e-04 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 38.48 E-value: 7.55e-04
10 20 30
....*....|....*....|....*....|....*....
gi 24655069 1099 GKELHTLKGHKSKIRSISIGKDSQRCVVGCDDTRALIYD 1137
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| NBCH_WD40 |
pfam20426 |
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at ... |
996-1190 |
8.88e-04 |
|
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at the C-terminus of neurobeachin-like proteins.
Pssm-ID: 466575 [Multi-domain] Cd Length: 350 Bit Score: 43.52 E-value: 8.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 996 NTLIISSSEDASIAITDLASGKLRHRITHHRGPVSGIVVAGACDVLISGGLDRTICVWDLDNftlLNTMQMTSAVLRIDI 1075
Cdd:pfam20426 94 NFLISCGNWENSFQVISLNDGRMVQSIRQHKDVVSCVAVTSDGSILATGSYDTTVMVWEVLR---GRSSEKRSRNTQTEF 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1076 SWNSVFLlalcednalyvrtlaTGKELHTLKGHKSKIRSISIGKDSQRCVVGCDDTRALIYDMHAGKLVRSLP-PNPGPV 1154
Cdd:pfam20426 171 PRKDHVI---------------AETPFHILCGHDDIITCLYVSVELDIVISGSKDGTCIFHTLREGRYVRSIRhPSGCPL 235
|
170 180 190
....*....|....*....|....*....|....*.
gi 24655069 1155 TAvhamdnddfLVTVGGNKITFYSfrNEELYVNPYS 1190
Cdd:pfam20426 236 SK---------LVASRHGRIVLYA--DDDLSLHLYS 260
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
1375-1403 |
1.06e-03 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 38.10 E-value: 1.06e-03
10 20
....*....|....*....|....*....
gi 24655069 1375 HSDEITCFEISADSVHIISGSRDMSLKVW 1403
Cdd:pfam00400 10 HTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
1375-1403 |
1.84e-03 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 37.68 E-value: 1.84e-03
10 20
....*....|....*....|....*....
gi 24655069 1375 HSDEITCFEISADSVHIISGSRDMSLKVW 1403
Cdd:smart00320 11 HTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
|
| PQQ_2 |
pfam13360 |
PQQ-like domain; This domain contains several repeats of the PQQ repeat. |
1004-1144 |
3.12e-03 |
|
PQQ-like domain; This domain contains several repeats of the PQQ repeat.
Pssm-ID: 433144 [Multi-domain] Cd Length: 233 Bit Score: 41.23 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 24655069 1004 EDASIAITDLASGKLRHRITHHRGPVSGIVVAGacDVLISGGLDRTICVWDLDNFTLLNTMQMTSAVLRI-DISWNSVFL 1082
Cdd:pfam13360 1 ADGVVTALDAATGAELWRVDLETGLGGGVAVDG--GRLFVATGGGQLVALDAATGKLLWRQTLSGEVLGApLVAGGRVFV 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 24655069 1083 LAlcEDNALYVRTLATGKELHTLKGHKSKIRSISIG---KDSQRCVVGCDDTRALIYDMHAGKLV 1144
Cdd:pfam13360 79 VA--GDGSLIALDAADGRRLWSYQRSGEPLALRSSGspaVVGDTVVAGFSSGKLVALDPATGKVR 141
|
|
|