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    LOC25482231 chlorophyll a-b binding protein 7, chloroplastic [ Medicago truncatula (barrel medic) ]

    Gene ID: 25482231, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC25482231
    Gene description
    chlorophyll a-b binding protein 7, chloroplastic
    Locus tag
    MtrunA17_Chr1g0157481
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC25482231 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 1 NC_053042.1 (8675876..8679383)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 1 NC_016407.2 (8659648..8663216)

    Chromosome 1 - NC_053042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112417148 Neighboring gene short-chain dehydrogenase/reductase family 42E member 1 Neighboring gene uncharacterized protein At1g76660 Neighboring gene UDP-rhamnose/UDP-galactose transporter 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in photosynthesis, light harvesting in photosystem I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chlorophyll a-b binding protein 7, chloroplastic
    Names
    light-harvesting complex I chlorophyll A/B-binding protein
    putative photosystem II

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053042.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      8675876..8679383
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024777408.2 → XP_024633176.1  chlorophyll a-b binding protein 7, chloroplastic isoform X2

      Conserved Domains (1) summary
      cl27676
      Location:32 → 296
      PLN00048; photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

    2. XM_013610773.3 → XP_013466227.1  chlorophyll a-b binding protein 7, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A072VE21
      Conserved Domains (1) summary
      PLN00171
      Location:32 → 327
      PLN00171; photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
    Nucleotide Protein
    Heading Accession and Version

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