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Conserved domains on  [gi|922398130|ref|XP_013466227|]
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chlorophyll a-b binding protein 7, chloroplastic isoform X1 [Medicago truncatula]

Protein Classification

PLN00171 family protein( domain architecture ID 11476442)

PLN00171 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 32-327 0e+00

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


:

Pssm-ID: 215088  Cd Length: 324  Bit Score: 579.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130  32 FAPKPRKHHL------ICNASWQELAGVLLFSAIPFTAVKVIANSPLGESLQRKMEETKQLAVKNSSKFKAQAAKARKQS 105
Cdd:PLN00171  22 LASKPRRRRAtrrpasSCRASWQELAGVLVFSAIPFTAVKAIANSSLGESLQRRLEETKKAAVEESSAFKAAAQKARNES 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 106 FWYGQGRPRWLGPISYDgYPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHF 185
Cdd:PLN00171 102 FWYGEERPRWLGPIPYD-YPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHF 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 186 VEPVWWRVGYSKLQGDTLDYLGIPGLHLAGSQGVVVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDP 265
Cdd:PLN00171 181 AEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDP 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 922398130 266 LNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHIYDPFHNNLLGSL 327
Cdd:PLN00171 261 LGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322
 
Name Accession Description Interval E-value
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 32-327 0e+00

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 579.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130  32 FAPKPRKHHL------ICNASWQELAGVLLFSAIPFTAVKVIANSPLGESLQRKMEETKQLAVKNSSKFKAQAAKARKQS 105
Cdd:PLN00171  22 LASKPRRRRAtrrpasSCRASWQELAGVLVFSAIPFTAVKAIANSSLGESLQRRLEETKKAAVEESSAFKAAAQKARNES 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 106 FWYGQGRPRWLGPISYDgYPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHF 185
Cdd:PLN00171 102 FWYGEERPRWLGPIPYD-YPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHF 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 186 VEPVWWRVGYSKLQGDTLDYLGIPGLHLAGSQGVVVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDP 265
Cdd:PLN00171 181 AEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDP 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 922398130 266 LNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHIYDPFHNNLLGSL 327
Cdd:PLN00171 261 LGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
124-301 2.16e-52

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 170.18  E-value: 2.16e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130  124 YPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHfvEPVWWRVGYsklqgDTL 203
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGN--EPVWFEAGA-----VAL 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130  204 DYLGIPGLhlagsqgvvvIAICQALLMVGPEYARYCGIEALEPLGiylPGDINYPGGALFDPLNLS-KDPEAFEELKVKE 282
Cdd:pfam00504  74 HAQSVPTL----------LALQILLLMGFLELARWQGGKAPGLGG---GGDRGYPGGFGFDPLGLAkKDPETLAELKLKE 140

                         170
                  ....*....|....*....
gi 922398130  283 IKNGRLAMMAWLGFFTQAA 301
Cdd:pfam00504 141 LKNGRLAMIAFLGFFVQEL 159
 
Name Accession Description Interval E-value
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 32-327 0e+00

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 579.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130  32 FAPKPRKHHL------ICNASWQELAGVLLFSAIPFTAVKVIANSPLGESLQRKMEETKQLAVKNSSKFKAQAAKARKQS 105
Cdd:PLN00171  22 LASKPRRRRAtrrpasSCRASWQELAGVLVFSAIPFTAVKAIANSSLGESLQRRLEETKKAAVEESSAFKAAAQKARNES 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 106 FWYGQGRPRWLGPISYDgYPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHF 185
Cdd:PLN00171 102 FWYGEERPRWLGPIPYD-YPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHF 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 186 VEPVWWRVGYSKLQGDTLDYLGIPGLHLAGSQGVVVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDP 265
Cdd:PLN00171 181 AEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDP 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 922398130 266 LNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHIYDPFHNNLLGSL 327
Cdd:PLN00171 261 LGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 95-322 3.47e-79

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 242.34  E-value: 3.47e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130  95 KAQAAKARKQSFWYGQGRPRWLGPISYDGyPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIP 174
Cdd:PLN00025  34 KTVAKAAGSGSIWYGPDRPKYLGPFSGET-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTP 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 175 ELLDLLGVfHFVEPVWWRVGYSKLQGDTLDYLGIPGLHLAgsQGVVVIAICQALLMVGPEYARYCGiealEPLGIYLpgD 254
Cdd:PLN00025 113 ELLAKNGV-KFGEAVWFKAGAQIFSEGGLDYLGNPSLVHA--QSILAIWACQVVLMGAVEGYRVNG----GPLGEGL--D 183

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 922398130 255 INYPGGAlFDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHIYDPFHNN 322
Cdd:PLN00025 184 PLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANN 250
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
124-301 2.16e-52

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 170.18  E-value: 2.16e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130  124 YPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHfvEPVWWRVGYsklqgDTL 203
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGN--EPVWFEAGA-----VAL 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130  204 DYLGIPGLhlagsqgvvvIAICQALLMVGPEYARYCGIEALEPLGiylPGDINYPGGALFDPLNLS-KDPEAFEELKVKE 282
Cdd:pfam00504  74 HAQSVPTL----------LALQILLLMGFLELARWQGGKAPGLGG---GGDRGYPGGFGFDPLGLAkKDPETLAELKLKE 140

                         170
                  ....*....|....*....
gi 922398130  283 IKNGRLAMMAWLGFFTQAA 301
Cdd:pfam00504 141 LKNGRLAMIAFLGFFVQEL 159
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 91-329 6.80e-51

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 169.29  E-value: 6.80e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130  91 SSKFKAQAAKARKQS-----FWYGQGRPRWLGPISYdgyPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAM 165
Cdd:PLN00147  19 SSSHCTRSISSVAASsgginPVVAQERPTWLPGLDP---PPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAM 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 166 LASVGALIPELLDLLGVFHFvePVWWRVGYSKLQgdtldylgipglhLAGSQGVVVIaicQALLMVGPEYARYC------ 239
Cdd:PLN00147  96 AGVAGILFTDLLRVTGIRNL--PVWYEAGAVKFE-------------FASTRTLFVV---QLLLMGFAETKRYMdfvspg 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 240 ---------GIE-ALEPLGiylPGdinYPGGALFDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQ 309
Cdd:PLN00147 158 sqakegsffGLEaALEGLE---PG---YPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPID 231

                        250       260
                 ....*....|....*....|
gi 922398130 310 NIVDHIYDPFHNNLLGSLNS 329
Cdd:PLN00147 232 NLLTHLSDPWHKTIIQTLSH 251
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 83-327 3.68e-48

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 162.71  E-value: 3.68e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130  83 TKQLAVKNSSKFKAQAAKARKQSFWY----------GQGRPRWLgpiSYDGYPSYLHGELPGDYGFDIAGLAkDP----- 147
Cdd:PLN00048   3 GVQTARRALSSSAARSSSAKKARFVVraeatppakqGADRQLWF---ASKQSLSYLDGTLPGDFGFDPLGLS-DPegagg 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 148 -VELQKYFNFEILHARWAMLASVGALIPELLDLLGVF-HFVEPVWWRVGYSKLQGdTLDYLGIPglhlagsqgvVVIAIC 225
Cdd:PLN00048  79 fIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIpQETALPWFQSGVIPPAG-TYDYWADP----------YTLFVL 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 226 QALLMVGPEYAR-----YCGIEALEPL-----GIYLPGDINYPGGALFDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLG 295
Cdd:PLN00048 148 EMALMGFAEHRRaqdyyKPGSMGKQYFlglekGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILG 227

                        250       260       270
                 ....*....|....*....|....*....|..
gi 922398130 296 FFTQAALTGKGPVQNIVDHIYDPFHNNLLGSL 327
Cdd:PLN00048 228 YFIQALVTGVGPFQNLLDHLADPVNNNVLTNL 259
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 111-323 1.71e-43

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 149.79  E-value: 1.71e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 111 GRPRwlgpisydgyPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPElldLLGVFHFVEPVW 190
Cdd:PLN00099  50 GQPR----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPE---ALGLGNWVKAQE 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 191 WrvgySKLQGDTLDYLGIPglhLAGSQGVVVIAIcQALLMVGPEYARycgieALEPlgiyLPGDINYPGGAlFDPLNLSK 270
Cdd:PLN00099 117 W----AAIPGGQATYLGNP---VPWGTLPTILAI-EFLAIAFVEHQR-----SMEK----DPEKKKYPGGA-FDPLGYSK 178

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 922398130 271 DPEAFEELKVKEIKNGRLAMMAWLGF-FTQAALTGKGPVQNIVDHIYDPFHNNL 323
Cdd:PLN00099 179 DPKKFEEYKVKEIKNGRLALLAFVGFcVQQSAYPGTGPLENLATHLADPWHNNI 232
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 112-325 5.44e-41

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 143.61  E-value: 5.44e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 112 RPRWLgPISydGYPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHFvePVWw 191
Cdd:PLN00097  44 RPTWL-PGK--AAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADL--PNW- 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 192 rVGYSKLQGdtldylgipglHLAGSQGVVVIaicQALLMVGPEYARYCGIEA-----LEPLGIYLPGDIN----YPGGaL 262
Cdd:PLN00097 118 -IDAAKWDG-----------YWAGAGPLFFI---QMAMFNWAEIRRWQDMKApgsmnEDPLFGANKGDTNtdvgYPKG-L 181

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 922398130 263 FDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHIYDPFHNNLLG 325
Cdd:PLN00097 182 FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIFG 244
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 77-329 3.53e-39

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 139.28  E-value: 3.53e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130  77 QRKMEETKQLAVKNSSKFKAQAAKARKQSFW--YGQGRPRWLGPISYdgyPSYLHGELPGDYGFDIAGLAKDPVELQKYF 154
Cdd:PLN00098  25 LRRPIVASQSGTGGRMKVRLNATKGGVSSVCepLPPDRPLWFPGSSP---PEWLDGSLPGDFGFDPLGLGSDPELLKWFA 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 155 NFEILHARWAMLASVGALIPELLDLLGvfhFVEpvwwrvGYSKLQGDTLDYLGIPglhlagsqgvVVIAICQALLMVGPE 234
Cdd:PLN00098 102 QAELMHSRWAMLAVAGILIPECLERLG---FIE------NFSWYDAGAREYFADP----------TTLFVVQMVLMGWAE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 235 YARYC-----GIEALEPlgiYLPG------DINYPGGALFDPLNLSK-DPEAFEELKVKEIKNGRLAMMAWLGFFTQAAL 302
Cdd:PLN00098 163 GRRWAdlikpGCVDIEP---KLPNktnpkpDVGYPGGLWFDPMMWGRgSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVY 239

                        250       260
                 ....*....|....*....|....*..
gi 922398130 303 TGKGPVQNIVDHIYDPFHNNLLGSLNS 329
Cdd:PLN00098 240 TGEGPIENLMAHLADPGHCNVFSAFTS 266
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 76-327 4.13e-38

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 136.20  E-value: 4.13e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130  76 LQRKMEeTKQLAVKNSSKFKAQAAKARkqsfwygqgrprWLGPISYdgyPSYLHGELPGDYGFDIAGLAKDPVELQKYFN 155
Cdd:PLN00101  30 LNRELS-FKPMPSSATRSFKVEAKKGE------------WLPGLAS---PGYLNGSLPGDNGFDPLGLAEDPENLKWFVQ 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 156 FEILHARWAMLASVGALIPELLDLLGVFHfvEPVWWRVGYSKlqgdtldylgipglHLAGSQGVVVIaicQALLMVGPEY 235
Cdd:PLN00101  94 AELVNGRWAMLGVAGMLLPEVFTKIGIIN--APQWYDAGKAE--------------YFASSSTLFVI---EFILFHYVEI 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 236 ARYCGIE-----ALEPL--GIYLP-GDINYPGGaLFDPLNLskdpEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGP 307
Cdd:PLN00101 155 RRWQDIKnpgsvNQDPIfkQYSLPpNEVGYPGG-IFNPLNF----APTEEAKEKELANGRLAMLAFLGFVVQHNVTGKGP 229

                        250       260
                 ....*....|....*....|
gi 922398130 308 VQNIVDHIYDPFHNNLLGSL 327
Cdd:PLN00101 230 FENLLQHLSDPWHNTIVQTL 249
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 93-329 1.22e-36

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 133.38  E-value: 1.22e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130  93 KFKAQAAKARKQSFWYGQGRPRWL-GPISydgyPSYLHGELPGDYGFDIAGLAKdPVE---------------------- 149
Cdd:PLN00187  33 KKKKAAKKAKKKSSKVGADRPLWFpGAKA----PEWLDGSLVGDYGFDPFGLGK-PAEylqfdldsldqnlaknlagdvi 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 150 ----------------------LQKYFNFEILHARWAMLASVGALIPELLDllGVfhfvepVWWRVGYSKLQgDTLDYLG 207
Cdd:PLN00187 108 gtrteaseikstpfqpysevfgLQRFRECELIHGRWAMLATLGALSVEALT--GV------TWQDAGKVELV-DGSSYLG 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 208 IPglhLAGSqgVVVIAICQALLMVGPEYARYCGIEALEPLgiylpgdinYPGGALFDPLNLSKDPEAFEELKVKEIKNGR 287
Cdd:PLN00187 179 QP---LPFS--ITTLIWIEVLVIGYIEFQRNAELDPEKRL---------YPGGKFFDPLGLAADPEKKETLQLAEIKHAR 244

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 922398130 288 LAMMAWLGFFTQAALTGKGPVQNIVDHIYDPFHNNLLGSLNS 329
Cdd:PLN00187 245 LAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 87-326 2.86e-35

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 128.45  E-value: 2.86e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130  87 AVKNSSKFKAQAAKARKQSFWYGQGRPrwlgpisydgyPSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAML 166
Cdd:PLN00100  18 AGVSTTRRPRVRVAARARPMWYPGATA-----------PKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMA 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 167 ASVGALIPELLDLlgvfhfvePVWWRVGYSKLQGDTLDYLGIPglhlagsqgVVVIAICQAllmvgpeyARYCGIEAlep 246
Cdd:PLN00100  87 ATAGILFTDAVGL--------PKFWEAGAEKYGLDLQTLVLIQ---------VVVMAVLEA--------ARYRGFMK--- 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 247 lgiylPGDINYPGGALFDPLNLSKdpeafEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHIYDPFHNNLLGS 326
Cdd:PLN00100 139 -----TGESGVLSFFPFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTS 208
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 98-308 2.20e-20

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 88.83  E-value: 2.20e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130  98 AAKARKQSFWYGQGRPRWLGPISYDGY---PSYLHGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGAlip 174
Cdd:PLN00170  37 GARTLLVVAAAAQPKKSWIPAVKGGGNlvdPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--- 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 175 elldllgvfhFVEPVWWRVGYSKLQGDtldylgiPGLHLAGSQGVVVIAicQALLMVGPEYARYC--------GIEALEP 246
Cdd:PLN00170 114 ----------FVGQAWSGIPWFEAGAD-------PGAIAPFSFGSLLGT--QLLLMGWVESKRWVdffnpdsqSVEWATP 174

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 922398130 247 LG------IYLPGDINYPGGALFDPLNLS---------KDPEAFEELKVKEIKNGRLAMMAWLGFFTQAAlTGKGPV 308
Cdd:PLN00170 175 WSrtaenfANATGLQGYPGGKFFDPLGLAgtvkdgvyiPDFEKLERLKLAEIKHARLAMVAMLIFYFEAG-QGKTPL 250
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
250-312 5.91e-12

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 63.09  E-value: 5.91e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 922398130  250 YLPGDinYPGGALFDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIV 312
Cdd:pfam00504   4 YLDGS--LPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEPV 64
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 134-306 1.29e-11

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 63.16  E-value: 1.29e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 134 GDYGFDIAGLAKDPVELQKYF-NFEILHARWAMLASVGALIPElldllgvfhFVepvwwrvgysKLQGDTLDYLGIPGlh 212
Cdd:PLN00089  55 GSKKFDPLGLAEKVEEFLPWFrESELKHGRAAMLAVAGFIAPD---------FV----------RIPGEAYSFAAIPK-- 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 922398130 213 lagsqgvvVIAICQALLMVGPEYARYCGIEALEpLGIYLPGDINY------PGGALFDPLNLS-KDPEAFEELKVKEIKN 285
Cdd:PLN00089 114 --------TIDAHDALLKSGAMIQIFAWIGFVD-LAVSAPAAAAAaefdrtPGDFGFDLLALYpKDAAKMEKKKDKELKN 184

                        170       180
                 ....*....|....*....|.
gi 922398130 286 GRLAMMAWLGFFTQAALTGKG 306
Cdd:PLN00089 185 GRLAMVAIGGIATGSAITGHG 205
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 263-301 3.78e-05

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 43.96  E-value: 3.78e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 922398130 263 FDPLNLSK--DPEAFEELKVKEIKNGRLAMMAWLGFFTQAA 301
Cdd:PLN00120  47 FDPLGLVDdgDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
123-176 1.10e-03

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 39.21  E-value: 1.10e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 922398130  123 GYPSYLHGELPGDYGFDIAGLA-KDPVELQKYFNFEILHARWAMLASVGALIPEL 176
Cdd:pfam00504 105 GLGGGGDRGYPGGFGFDPLGLAkKDPETLAELKLKELKNGRLAMIAFLGFFVQEL 159
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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