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    chtf8 CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae) [ Danio rerio (zebrafish) ]

    Gene ID: 555570, updated on 17-Aug-2024

    Summary

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    Official Symbol
    chtf8provided by ZNC
    Official Full Name
    CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050419-148
    See related
    Ensembl:ENSDARG00000069045 AllianceGenome:ZFIN:ZDB-GENE-050419-148
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:158641; si:ch211-218c6.5
    Summary
    Predicted to act upstream of or within mitotic sister chromatid cohesion. Predicted to be part of Ctf18 RFC-like complex. Orthologous to human CHTF8 (chromosome transmission fidelity factor 8). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 18
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (17021360..17024703)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (17032294..17035637)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene tryptophan hydroxylase 2 (tryptophan 5-monooxygenase) Neighboring gene TBC1 domain family, member 15 Neighboring gene hyaluronan synthase 3 Neighboring gene transport and golgi organization 6 homolog (Drosophila)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC158641

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within mitotic sister chromatid cohesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Ctf18 RFC-like complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    chromosome transmission fidelity protein 8 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044336.3 → NP_001037801.3  chromosome transmission fidelity protein 8 homolog

      See identical proteins and their annotated locations for NP_001037801.3

      Status: VALIDATED

      Source sequence(s)
      BX950194, EH538440, EH542341, EH569067
      UniProtKB/TrEMBL
      B7ZVM8, Q1LUE7
      Related
      ENSDARP00000090933.3, ENSDART00000100160.4
      Conserved Domains (1) summary
      pfam09696
      Location:50 → 116
      Ctf8; Ctf8

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      17021360..17024703
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021467656.1 → XP_021323331.1  chromosome transmission fidelity protein 8 homolog isoform X1

      UniProtKB/TrEMBL
      B7ZVM8, Q1LUE7
      Related
      ENSDARP00000152194.1, ENSDART00000189168.1
      Conserved Domains (1) summary
      pfam09696
      Location:50 → 116
      Ctf8; Ctf8

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395338.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      225896..229297
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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