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Conserved domains on  [gi|1207134484|ref|XP_021323331|]
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chromosome transmission fidelity protein 8 homolog isoform X1 [Danio rerio]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ctf8 super family cl09902
Ctf8; Ctf8 (chromosome transmissions fidelity 8) is a component of the Ctf18 RFC-like complex ...
 19-116 9.16e-07

Ctf8; Ctf8 (chromosome transmissions fidelity 8) is a component of the Ctf18 RFC-like complex which is a DNA clamp loader involved in sister chromatid cohesion.


The actual alignment was detected with superfamily member pfam09696:

Pssm-ID: 430758  Cd Length: 129  Bit Score: 44.55  E-value: 9.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207134484  19 LVELQGEM-----VSRQNTGLAGNLMGDLHYTKEGVPI----------------------LIVGHHI-LYGKQVKLEKPF 70
Cdd:pfam09696   5 LLELQGTInlpteAPEEADDESLSNFITVDEIYHAVPIgrldfpdysndpddtkwmkrvyLYVGKHQrLTGEVKKLPKPL 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1207134484  71 AVLMKHsgLPQDAEENMETNQEKPTS-YTVSALIKKKLIFKTRPKPI 116
Cdd:pfam09696  85 AVLRRR--KSEDTGGPGGGNEEESGEeLEIVDIVKYKIIFSSRPEPV 129
 
Name Accession Description Interval E-value
Ctf8 pfam09696
Ctf8; Ctf8 (chromosome transmissions fidelity 8) is a component of the Ctf18 RFC-like complex ...
 19-116 9.16e-07

Ctf8; Ctf8 (chromosome transmissions fidelity 8) is a component of the Ctf18 RFC-like complex which is a DNA clamp loader involved in sister chromatid cohesion.


Pssm-ID: 430758  Cd Length: 129  Bit Score: 44.55  E-value: 9.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207134484  19 LVELQGEM-----VSRQNTGLAGNLMGDLHYTKEGVPI----------------------LIVGHHI-LYGKQVKLEKPF 70
Cdd:pfam09696   5 LLELQGTInlpteAPEEADDESLSNFITVDEIYHAVPIgrldfpdysndpddtkwmkrvyLYVGKHQrLTGEVKKLPKPL 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1207134484  71 AVLMKHsgLPQDAEENMETNQEKPTS-YTVSALIKKKLIFKTRPKPI 116
Cdd:pfam09696  85 AVLRRR--KSEDTGGPGGGNEEESGEeLEIVDIVKYKIIFSSRPEPV 129
 
Name Accession Description Interval E-value
Ctf8 pfam09696
Ctf8; Ctf8 (chromosome transmissions fidelity 8) is a component of the Ctf18 RFC-like complex ...
 19-116 9.16e-07

Ctf8; Ctf8 (chromosome transmissions fidelity 8) is a component of the Ctf18 RFC-like complex which is a DNA clamp loader involved in sister chromatid cohesion.


Pssm-ID: 430758  Cd Length: 129  Bit Score: 44.55  E-value: 9.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207134484  19 LVELQGEM-----VSRQNTGLAGNLMGDLHYTKEGVPI----------------------LIVGHHI-LYGKQVKLEKPF 70
Cdd:pfam09696   5 LLELQGTInlpteAPEEADDESLSNFITVDEIYHAVPIgrldfpdysndpddtkwmkrvyLYVGKHQrLTGEVKKLPKPL 84

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1207134484  71 AVLMKHsgLPQDAEENMETNQEKPTS-YTVSALIKKKLIFKTRPKPI 116
Cdd:pfam09696  85 AVLRRR--KSEDTGGPGGGNEEESGEeLEIVDIVKYKIIFSSRPEPV 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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