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    rad54 CHR group protein [ Dictyostelium discoideum AX4 ]

    Gene ID: 8623874, updated on 18-Sep-2024

    Summary

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    Official Symbol
    rad54
    Official Full Name
    CHR group protein
    Primary source
    dictyBase:DDB_G0282997
    Locus tag
    DDB_G0282997
    See related
    AmoebaDB:DDB_G0282997; VEuPathDB:DDB_G0282997
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Dictyostelium discoideum AX4 (strain: AX4)
    Lineage
    Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales; Dictyosteliaceae; Dictyostelium
    Old locus tag
    DDBDRAFT_0185308; DDBDRAFT_0232369; DDB_0185308; DDB_0232369
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_007090.3 (118731..121607)

    Chromosome 4 - NC_007090.3Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene PEK family protein kinase Neighboring gene HisK family protein kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_007090.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the social amoeba Dictyostelium discoideum. Eichinger L, et al. Nature, 2005 May 5. PMID 15875012, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by dictyBase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA translocase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in double-strand break repair via synthesis-dependent strand annealing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in reciprocal meiotic recombination IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    CHR group protein
    Names
    DEAD/DEAH box helicase domain-containing protein
    SNF2-related domain-containing protein
    helicase, C-terminal domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_007090.3 Reference assembly

      Range
      118731..121607
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_634211.1 → XP_639303.1  SNF2-related domain-containing protein [Dictyostelium discoideum AX4]

      See identical proteins and their annotated locations for XP_639303.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q54RP8
      Conserved Domains (3) summary
      cd00046
      Location:308 → 453
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:286 → 580
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:616 → 733
      Helicase_C; Helicase conserved C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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