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    NFYA nuclear transcription factor Y subunit alpha [ Chelonia mydas (Green sea turtle) ]

    Gene ID: 102947162, updated on 10-Mar-2024

    Summary

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    Gene symbol
    NFYA
    Gene description
    nuclear transcription factor Y subunit alpha
    Locus tag
    UY3_10569
    See related
    EnsemblRapid:ENSCMYG00015001679
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chelonia mydas
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
    Orthologs
    human mouse all
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    Genomic context

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    See NFYA in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current rCheMyd1.pri.v2 (GCF_015237465.2) 21 NC_051261.2 (9702573..9723694, complement)
    102 previous assembly rCheMyd1.pri (GCF_015237465.1) 24 NC_051264.1 (9131400..9152337)

    Chromosome 21 - NC_051261.2Genomic Context describing neighboring genes Neighboring gene triggering receptor expressed on myeloid cells like 1 Neighboring gene adenylate cyclase type 10 Neighboring gene O-acyl-ADP-ribose deacylase 1 Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 2 Neighboring gene translocator protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sea turtle fibropapilloma tumors share genomic drivers and therapeutic vulnerabilities with human cancers. Duffy DJ, et al. Commun Biol, 2018. PMID 30271945, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear transcription factor Y subunit alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rCheMyd1.pri.v2 Primary Assembly

    Genomic

    1. NC_051261.2 Reference rCheMyd1.pri.v2 Primary Assembly

      Range
      9702573..9723694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043533599.1 → XP_043389534.1  nuclear transcription factor Y subunit alpha isoform X10

      Conserved Domains (1) summary
      pfam02045
      Location:228 → 283
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    2. XM_037885298.2 → XP_037741226.1  nuclear transcription factor Y subunit alpha isoform X15

      Related
      ENSCMYP00015002607.1, ENSCMYT00015003120.1
      Conserved Domains (1) summary
      pfam02045
      Location:190 → 245
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    3. XM_037885293.2 → XP_037741221.1  nuclear transcription factor Y subunit alpha isoform X9

      UniProtKB/TrEMBL
      M7BW76
      Related
      ENSCMYP00015002604.1, ENSCMYT00015003117.1
      Conserved Domains (1) summary
      pfam02045
      Location:234 → 289
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    4. XM_043533597.1 → XP_043389532.1  nuclear transcription factor Y subunit alpha isoform X8

      Conserved Domains (1) summary
      smart00521
      Location:253 → 312
      CBF; CCAAT-Binding transcription Factor

    5. XM_037885290.2 → XP_037741218.1  nuclear transcription factor Y subunit alpha isoform X4

      Conserved Domains (1) summary
      pfam02045
      Location:261 → 316
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    6. XM_043533601.1 → XP_043389536.1  nuclear transcription factor Y subunit alpha isoform X12

      Conserved Domains (1) summary
      smart00521
      Location:216 → 275
      CBF; CCAAT-Binding transcription Factor

    7. XM_043533596.1 → XP_043389531.1  nuclear transcription factor Y subunit alpha isoform X7

      Conserved Domains (1) summary
      smart00521
      Location:254 → 313
      CBF; CCAAT-Binding transcription Factor

    8. XM_037885288.2 → XP_037741216.1  nuclear transcription factor Y subunit alpha isoform X3

      Conserved Domains (1) summary
      pfam02045
      Location:262 → 317
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    9. XM_037885287.2 → XP_037741215.1  nuclear transcription factor Y subunit alpha isoform X2

      Related
      ENSCMYP00015002598.1, ENSCMYT00015003111.1
      Conserved Domains (1) summary
      pfam02045
      Location:262 → 317
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    10. XM_037885297.2 → XP_037741225.1  nuclear transcription factor Y subunit alpha isoform X14

      Conserved Domains (1) summary
      pfam02045
      Location:213 → 268
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    11. XM_037885296.2 → XP_037741224.1  nuclear transcription factor Y subunit alpha isoform X13

      Conserved Domains (1) summary
      pfam02045
      Location:217 → 272
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    12. XM_037885295.2 → XP_037741223.1  nuclear transcription factor Y subunit alpha isoform X11

      Conserved Domains (1) summary
      pfam02045
      Location:219 → 274
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    13. XM_037885292.2 → XP_037741220.1  nuclear transcription factor Y subunit alpha isoform X6

      Conserved Domains (1) summary
      pfam02045
      Location:257 → 312
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    14. XM_037885291.2 → XP_037741219.1  nuclear transcription factor Y subunit alpha isoform X5

      Conserved Domains (1) summary
      pfam02045
      Location:261 → 316
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    15. XM_037885286.2 → XP_037741214.1  nuclear transcription factor Y subunit alpha isoform X1

      Conserved Domains (1) summary
      pfam02045
      Location:263 → 318
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    16. XM_043533595.1 → XP_043389530.1  nuclear transcription factor Y subunit alpha isoform X3

      Conserved Domains (1) summary
      pfam02045
      Location:262 → 317
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    17. XM_027825942.3 → XP_027681743.1  nuclear transcription factor Y subunit alpha isoform X1

      Conserved Domains (1) summary
      pfam02045
      Location:263 → 318
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    18. XM_043533598.1 → XP_043389533.1  nuclear transcription factor Y subunit alpha isoform X9

      UniProtKB/TrEMBL
      M7BW76
      Conserved Domains (1) summary
      pfam02045
      Location:234 → 289
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    19. XM_043533600.1 → XP_043389535.1  nuclear transcription factor Y subunit alpha isoform X10

      Conserved Domains (1) summary
      pfam02045
      Location:228 → 283
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    20. XM_007063515.3 → XP_007063577.1  nuclear transcription factor Y subunit alpha isoform X9

      See identical proteins and their annotated locations for XP_007063577.1

      UniProtKB/TrEMBL
      M7BW76
      Conserved Domains (1) summary
      pfam02045
      Location:234 → 289
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    21. XM_007063512.3 → XP_007063574.1  nuclear transcription factor Y subunit alpha isoform X3

      Conserved Domains (1) summary
      pfam02045
      Location:262 → 317
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    22. XM_007063513.3 → XP_007063575.1  nuclear transcription factor Y subunit alpha isoform X1

      Related
      ENSCMYP00015002593.1, ENSCMYT00015003106.1
      Conserved Domains (1) summary
      pfam02045
      Location:263 → 318
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    23. XM_027825943.3 → XP_027681744.1  nuclear transcription factor Y subunit alpha isoform X1

      Conserved Domains (1) summary
      pfam02045
      Location:263 → 318
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

    24. XM_037885289.2 → XP_037741217.1  nuclear transcription factor Y subunit alpha isoform X3

      Conserved Domains (1) summary
      pfam02045
      Location:262 → 317
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
    Nucleotide Protein
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